Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- endoplasmic reticulum 3
- extracellular 3
- golgi 2
- plasma membrane 2
- vacuole 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g032430.1.1 | Tomato | plasma membrane | 86.21 | 60.24 |
| PGSC0003DMT400091492 | Potato | nucleus | 70.69 | 48.52 |
| Solyc02g032340.1.1 | Tomato | mitochondrion | 56.9 | 39.29 |
| VIT_15s0024g01790.t01 | Wine grape | nucleus | 25.86 | 10.45 |
| VIT_19s0135g00160.t01 | Wine grape | nucleus | 25.86 | 10.45 |
| Solyc02g069470.2.1 | Tomato | plastid | 41.38 | 6.78 |
| Solyc11g069600.1.1 | Tomato | plastid | 40.52 | 6.41 |
| Solyc04g015280.2.1 | Tomato | cytosol, nucleus, plastid | 28.45 | 6.2 |
| Solyc05g056140.2.1 | Tomato | nucleus | 38.79 | 6.18 |
| Solyc04g076860.2.1 | Tomato | nucleus | 30.17 | 4.67 |
| Solyc02g091710.2.1 | Tomato | plastid | 27.59 | 4.46 |
| CDX93598 | Canola | endoplasmic reticulum, golgi, mitochondrion, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc02g032370.1.1 | EnsemblPlantsGene:Solyc02g032370.1 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF97 | PFAM:PF17123 | PFscan:PS50089 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00027691A1 | UniProt:K4B5I3 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr2:-:28387250..28387954
Molecular Weight (calculated)
13221.4 Da
IEP (calculated)
8.994
GRAVY (calculated)
0.169
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIFITCFIS PETCVICLGS IKAEKGKAIF TAECMHSFHF SCIGENVKHG NLICPICRSK WKEIPSQFGA DVTIVRRIRV LHCVNHSRPL PTVSPPLPQH
101: VQFFRWGLKH YTYHGL
101: VQFFRWGLKH YTYHGL
001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR
Arabidopsis Description
Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [extracellular,plastid,mitochondrion]
SUBAcon: [extracellular,plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.