Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054479 | Potato | plastid | 97.03 | 97.03 |
| VIT_00s0125g00180.t01 | Wine grape | plasma membrane | 59.32 | 60.34 |
| Solyc05g056140.2.1 | Tomato | nucleus | 45.9 | 44.64 |
| Solyc11g069600.1.1 | Tomato | plastid | 44.63 | 43.11 |
| Solyc02g032370.1.1 | Tomato | endoplasmic reticulum, extracellular | 6.78 | 41.38 |
| Solyc02g032430.1.1 | Tomato | plasma membrane | 9.04 | 38.55 |
| Solyc02g032340.1.1 | Tomato | mitochondrion | 8.76 | 36.9 |
| Solyc04g076860.2.1 | Tomato | nucleus | 29.1 | 27.47 |
| Solyc02g091710.2.1 | Tomato | plastid | 26.98 | 26.6 |
| Solyc04g015280.2.1 | Tomato | cytosol, nucleus, plastid | 17.37 | 23.12 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 | InterPro:IPR036465 |
| UniProt:K4B7S9 | PFAM:PF00092 | PFAM:PF14624 | PFAM:PF17123 | PFscan:PS50089 | PFscan:PS50234 |
| PANTHER:PTHR10579 | PANTHER:PTHR10579:SF97 | SMART:SM00184 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:Solyc02g069470.2 | EnsemblPlants:Solyc02g069470.2.1 | UniParc:UPI00027680C3 | InterPro:VWF_A | InterPro:Vwaint_dom | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf | : | : | : |
Description
No Description!
Coordinates
chr2:-:39342595..39346979
Molecular Weight (calculated)
76239.0 Da
IEP (calculated)
8.024
GRAVY (calculated)
-0.298
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSWSKLQK ALSFRQPKSP PENASSDAKS PPSTRPSSAA SSSTFSRLSR SFSSTSRSSK RTCAICLGSM KAGNGQAIFT AECAHSFHFS CIANSVKHGN
101: YLCPICRCKW KEIPLMSSFS TDVNTNNAGR TRVSPLEDNF LDNIPRVPPP VSLPLPEPLH FSDDEPLPSI TVDQTPSPSS VHPETAVLKA FPEYSAVAAS
201: GSMSRFAVLV GVKAPPLADD VRHQERAPID LVTVLDISGS MAGSKLTLLK QAVCFVIDNL GPSDRLSIVT FSSGAQRNFP LRRMTEQGRR EAAQAVNAIS
301: ANGGTNIVEG LKKGVRVLEE RRERNPVASI ILLSDGRDTF NGDIANQRRS PRNRRSSNAT SGPDFLNLLP SSICPRNREG LAAGQQPTFH VHTFGFGLDH
401: DSSAMHAISD ASGGTFSFIE TVGTVQDAFA MCIGGLLSVV VQELKLTVRS ASRGVEIGSI PSGRYASEIS EQGKQGVINI GNLYADEEKE FLVYLSVPSA
501: EIEQGATKTS LLQITCSYKN TISEEMVSVE GETVEIRRPP VLSPTDVVIS REVDRQINRL AVAETIAEAQ RLAEMGNLEA AQAALTNRRA TLLSSVSAQA
601: GDALCSWLET ELTEVRERMV SRERYEQTGR AYVLSGLSSH SWQRATTRGD TTSQILLQGG SSSNSGATMY ETPSMVSMIS KSQNLSLVNR SEQVPRPNKS
701: SNLPPPPS
101: YLCPICRCKW KEIPLMSSFS TDVNTNNAGR TRVSPLEDNF LDNIPRVPPP VSLPLPEPLH FSDDEPLPSI TVDQTPSPSS VHPETAVLKA FPEYSAVAAS
201: GSMSRFAVLV GVKAPPLADD VRHQERAPID LVTVLDISGS MAGSKLTLLK QAVCFVIDNL GPSDRLSIVT FSSGAQRNFP LRRMTEQGRR EAAQAVNAIS
301: ANGGTNIVEG LKKGVRVLEE RRERNPVASI ILLSDGRDTF NGDIANQRRS PRNRRSSNAT SGPDFLNLLP SSICPRNREG LAAGQQPTFH VHTFGFGLDH
401: DSSAMHAISD ASGGTFSFIE TVGTVQDAFA MCIGGLLSVV VQELKLTVRS ASRGVEIGSI PSGRYASEIS EQGKQGVINI GNLYADEEKE FLVYLSVPSA
501: EIEQGATKTS LLQITCSYKN TISEEMVSVE GETVEIRRPP VLSPTDVVIS REVDRQINRL AVAETIAEAQ RLAEMGNLEA AQAALTNRRA TLLSSVSAQA
601: GDALCSWLET ELTEVRERMV SRERYEQTGR AYVLSGLSSH SWQRATTRGD TTSQILLQGG SSSNSGATMY ETPSMVSMIS KSQNLSLVNR SEQVPRPNKS
701: SNLPPPPS
001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
Arabidopsis Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.