Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g032370.1.1 | Tomato | endoplasmic reticulum, extracellular | 60.24 | 86.21 |
| Solyc02g032340.1.1 | Tomato | mitochondrion | 51.2 | 50.6 |
| PGSC0003DMT400085780 | Potato | nucleus | 63.25 | 26.92 |
| VIT_19s0135g00160.t01 | Wine grape | nucleus | 21.69 | 12.54 |
| VIT_15s0024g01790.t01 | Wine grape | nucleus | 20.48 | 11.85 |
| Solyc02g069470.2.1 | Tomato | plastid | 38.55 | 9.04 |
| Solyc11g069600.1.1 | Tomato | plastid | 36.14 | 8.19 |
| Solyc05g056140.2.1 | Tomato | nucleus | 34.94 | 7.97 |
| Solyc04g015280.2.1 | Tomato | cytosol, nucleus, plastid | 22.89 | 7.14 |
| Solyc04g076860.2.1 | Tomato | nucleus | 24.7 | 5.47 |
| Solyc02g091710.2.1 | Tomato | plastid | 22.89 | 5.29 |
| CDX93598 | Canola | endoplasmic reticulum, golgi, mitochondrion, vacuole | 0.6 | 0.26 |
Protein Annotations
| EnsemblPlants:Solyc02g032430.1.1 | EnsemblPlantsGene:Solyc02g032430.1 | Gene3D:3.30.40.10 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF97 |
| PFAM:PF17123 | PFscan:PS50089 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI00027691A7 |
| UniProt:K4B5I9 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:28467697..28468551
Molecular Weight (calculated)
18655.3 Da
IEP (calculated)
8.982
GRAVY (calculated)
0.363
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTALYGLQF LAIHVLYINP PIIAVIISFL NLFHCFVMMI IFITCLISPE TCVICLGSMK AEKGKAIFTA ECMHSFHFSC IGENVKHRNL ICPICRSKWK
101: EIPSQFGADV TIVRRIRVLH RVNRSRPLPT VSPPLPQHVQ FSDGGSSIIH IMGYNMVSND QHSSRG
101: EIPSQFGADV TIVRRIRVLH RVNRSRPLPT VSPPLPQHVQ FSDGGSSIIH IMGYNMVSND QHSSRG
001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
Arabidopsis Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.