Factsheet for Solyc02g091710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g095040.2.1
Solyc03g096000.2.1
Solyc03g097100.1.1
Solyc03g112520.2.1
Solyc03g112920.1.1
Solyc04g015010.2.1
Solyc05g024240.2.1
Solyc05g052510.2.1
Solyc05g053660.1.1
Solyc06g050350.2.1
Solyc06g051310.2.1
Solyc06g061020.2.1
Solyc08g007120.2.1
Solyc08g013680.2.1
Solyc08g077460.2.1
Solyc08g083370.2.1
Solyc09g082970.2.1
Solyc11g012660.1.1
Solyc11g013370.1.1
Solyc12g055830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	Solyc08g013680.2.1	AT1G01050.1	21798944
AT5G65683.1	Solyc08g083370.2.1	AT1G01050.1	21798944
AT5G65683.1	Solyc12g055830.1.1	AT1G01050.1	21798944
AT5G65683.1	Solyc01g095040.2.1	AT1G01510.1	21798944
AT5G65683.1	Solyc11g013370.1.1	AT2G44950.1	21798944
AT5G65683.1	Solyc03g097100.1.1	AT3G03000.1	21798944
AT5G65683.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT5G65683.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT5G65683.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT5G65683.1	Solyc09g082970.2.1	AT3G22960.1	21798944
AT5G65683.1	Solyc05g053660.1.1	AT3G24140.1	21798944
AT5G65683.1	Solyc03g112920.1.1	AT3G48550.1	21798944
AT5G65683.1	Solyc03g112520.2.1	AT3G54170.1	21798944
AT5G65683.1	Solyc06g050350.2.1	AT3G56270.1	21798944
AT5G65683.1	Solyc04g015010.2.1	AT4G17220.1	21798944
AT5G65683.1	Solyc11g012660.1.1	AT4G17220.1	21798944
AT5G65683.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT5G65683.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT5G65683.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT5G65683.1	Solyc05g024240.2.1	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078676	Potato	plastid	97.08	98.03
VIT_07s0205g00030.t01	Wine grape	nucleus	60.72	66.46
KRH74431	Soybean	mitochondrion	53.9	56.91
KRH39527	Soybean	extracellular, golgi	40.81	54.16
Solyc04g076860.2.1	Tomato	nucleus	56.55	54.13
CDY25618	Canola	nucleus, peroxisome, plastid	46.38	50.3
Bra030218.1-P	Field mustard	nucleus	46.52	49.7
KRH45468	Soybean	cytosol, peroxisome	27.58	49.13
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	46.24	48.47
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	46.1	48.46
CDX89500	Canola	cytosol, peroxisome, plastid	45.4	48.44
CDY31616	Canola	nucleus	46.1	48.18
KRH75634	Soybean	nucleus	43.18	47.84
Bra017859.1-P	Field mustard	plastid	41.78	47.47
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	44.71	46.59
AT4G37890.1	Thale cress	nucleus	47.77	46.41
Bra024408.1-P	Field mustard	plastid	45.26	45.9
CDY08765	Canola	plastid	45.26	45.9
CDY52535	Canola	plastid	45.26	45.77
Bra031849.1-P	Field mustard	plastid	44.71	45.34
CDY45614	Canola	plastid	44.85	45.22
AT5G65683.1	Thale cress	peroxisome, plastid	44.71	44.77
GSMUA_Achr5P14740_001	Banana	mitochondrion	42.06	43.64
KRH45469	Soybean	nucleus	10.72	43.5
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	44.29	43.44
Zm00001d024940_P001	Maize	peroxisome	44.29	43.15
Zm00001d004553_P001	Maize	peroxisome	44.57	42.67
TraesCS2A01G045100.1	Wheat	peroxisome	44.99	42.5
GSMUA_Achr7P01890_001	Banana	mitochondrion	42.2	42.44
TraesCS2D01G043700.1	Wheat	peroxisome	44.71	42.07
CDY37838	Canola	plastid	29.25	42.0
TraesCS2B01G057300.1	Wheat	peroxisome	44.57	41.56
GSMUA_Achr4P22090_001	Banana	nucleus	41.36	41.54
OQU81040	Sorghum	peroxisome	39.97	40.14
Solyc05g056140.2.1	Tomato	nucleus	28.13	27.75
Solyc02g032370.1.1	Tomato	endoplasmic reticulum, extracellular	4.46	27.59
Solyc11g069600.1.1	Tomato	plastid	27.58	27.01
Solyc02g069470.2.1	Tomato	plastid	26.6	26.98
Solyc02g032340.1.1	Tomato	mitochondrion	5.99	25.6
Solyc02g032430.1.1	Tomato	plasma membrane	5.29	22.89
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	15.46	20.86

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	UniProt:K4BCW9	PFAM:PF00092	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF59	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc02g091710.2	EnsemblPlants:Solyc02g091710.2.1	UniParc:UPI0002767B67	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr2:+:52957647..52960344

Molecular Weight (calculated)

79651.2 Da

IEP (calculated)

10.236

GRAVY (calculated)

-0.393

Length

718 amino acids

Sequence
(BLAST)

001: MVLGWRRAFC TSIPRDRDTK EKQDNTNPTP SPRINSKFGF FSNPSTPRFQ SPPVSSSILR CRTTAAPATV QAASAPGSPK LQCKTKNSPR FFNRSTPSSP
101: RSPSTFSLLK SSLRFSKTKC GTCLQTVKTG QGTAIFTAEC SHSFHFPCIA ALLRKQTALV CPVCHAEWKE LPLLSIHDTQ KPVKVEEKTI REVSPSPKAK
201: GDVKFTTETN FQGRPILKVY NDDEPLMSPT SGARFNPIPE SDEYDEESDN VVEEFQGFFV DANVKPLKDS LVNFTNFEAR LLPEAAVVSV GRSYETYVII
301: LKLKAPSALT RTARRAPIDL VMVLDVSGKM KAQNIQMMKR AMRLVISSLS TSDRLSIVAF STTSKRLLPL RRMTTSGKRS ARRIVDAIVA LDGTGTSASD
401: ALKKAAKVLE DRRERNPVAS IMLLSDCPND RLTTTISTNQ RYQSTIVSTC TRLNNSEIPV HSIGLNQSND DVFKKFIGGI INVVVQDLRV QVGFVSGSAP
501: AEVAAVYSYT NRPAALGSGS LRLGDFYAEE ERELLVELKV PTSAIGTHHV LSVRCSYKDP STQELVYCKE QALLVPRPHA VRSSTPNIQR LRDLFISTRA
601: MAESKRLIER NDLTGAHHML SSARALLVQS NSSSAGEFVH GLETELSELH YRRQNQAQSQ SQQPHRRRIN VHQREDDKAE PLTPTSAWRA AERLAKVAIM
701: RKSLNRVSDL HGFEDARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.