Factsheet for Solyc05g053660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g063430.2.1	nucleus
Solyc02g091690.2.1	nucleus
Solyc03g097400.1.1
Solyc04g006990.2.1
Solyc04g077290.1.1
Solyc04g081450.2.1
Solyc05g009880.2.1
Solyc06g054260.1.1
Solyc08g076820.2.1	nucleus
Solyc08g080120.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	Solyc04g081450.2.1	AT1G19980.1	21798944
AT3G24140.1	Solyc08g080120.2.1	AT1G62990.1	21798944
AT3G24140.1	Solyc03g097400.1.1	AT1G73790.1	21798944
AT3G24140.1	Solyc04g006990.2.1	AT3G25710.1	21798944
AT3G24140.1	Solyc05g009880.2.1	AT3G25710.1	21798944
AT3G24140.1	Solyc06g054260.1.1	AT4G02770.1	21798944
AT3G24140.1	Solyc04g077290.1.1	AT5G45600.1	21798944
AT3G24140.1	Solyc08g076820.2.1	AT5G46690.1	17088607
AT3G24140.1	Solyc08g076820.2.1	AT5G46690.1	21798944
AT3G24140.1	Solyc02g063430.2.1	AT5G65640.1	17088607
AT3G24140.1	Solyc02g091690.2.1	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040761	Potato	nucleus	95.56	93.85
GSMUA_Achr8P28400_001	Banana	nucleus	34.2	65.83
VIT_05s0029g00050.t01	Wine grape	nucleus	66.06	63.73
Solyc09g091760.1.1	Tomato	nucleus	40.73	63.16
GSMUA_Achr2P06030_001	Banana	nucleus	51.17	61.44
Bra001929.1-P	Field mustard	nucleus	60.84	57.53
CDX92996	Canola	nucleus	60.84	57.53
CDX94841	Canola	nucleus	60.31	56.62
Bra028357.1-P	Field mustard	nucleus	58.49	56.0
AT3G24140.1	Thale cress	nucleus	59.79	55.31
CDX85167	Canola	nucleus	55.87	55.01
KRH75571	Soybean	nucleus	61.1	54.55
KRH71094	Soybean	nucleus	60.84	52.24
CDX77460	Canola	nucleus	48.3	51.97
Os05t0586300-00	Rice	nucleus	50.13	49.61
Bra028351.1-P	Field mustard	nucleus	46.21	49.17
CDY64587	Canola	nucleus	46.48	47.98
CDY18083	Canola	nucleus	47.78	47.66
Zm00001d009715_P001	Maize	nucleus	51.17	46.89
TraesCS1D01G289400.1	Wheat	nucleus	49.61	45.35
TraesCS1B01G300100.1	Wheat	nucleus	49.09	45.08
TraesCS1A01G290800.1	Wheat	nucleus	48.56	44.29
KXG22636	Sorghum	nucleus	52.22	43.76
HORVU1Hr1G071330.3	Barley	nucleus	48.56	42.66
Solyc01g080050.2.1	Tomato	nucleus	21.67	42.56
Solyc12g087850.1.1	Tomato	nucleus	17.23	40.74
Solyc11g010340.1.1	Tomato	nucleus	26.11	33.56
Solyc03g007410.2.1	Tomato	nucleus	28.72	32.93
Solyc08g076820.2.1	Tomato	nucleus	28.2	32.93
Solyc04g074810.2.1	Tomato	extracellular	28.72	30.99
Solyc01g098720.2.1	Tomato	nucleus	25.07	29.27

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009987	GO:GO:0010052	GO:GO:0010377	GO:GO:0010444	GO:GO:0016043	GO:GO:0019538
GO:GO:0030154	GO:GO:0045597	GO:GO:0045893	GO:GO:0046983	GO:GO:0051782	GO:GO:0061086
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K4C246	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc05g053660.1	EnsemblPlants:Solyc05g053660.1.1
UniParc:UPI000276651E	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

Transcription factor FAMA [Source:Projected from Arabidopsis thaliana (AT3G24140) UniProtKB/Swiss-Prot;Acc:Q56YJ8]

Coordinates

chr5:+:63721521..63723863

Molecular Weight (calculated)

43412.2 Da

IEP (calculated)

4.924

GRAVY (calculated)

-0.696

Length

383 amino acids

Sequence
(BLAST)

001: MEKEENCQAN NTLPTSFQMA IIGESSSNNT NNQMVDYMVD SQSIQQQQHN QSSLGFLPSN PSLDKLSFAD VMQFADFGPK LALNQTKVLE QDVGIDDPVY
101: FLKFPVLNEK KNDNDNDDDR EEGLMISGGK EKSENNNNNV EKNQEGKSNN KRKRPRIKTS EEVESQRMTH IAVERNRRKQ MNEHLRVLRS LMPGSYVQRG
201: DQASIIGGAI EFVRELEQLL QCLESQKRRR IYGDTPTRPL GDSSTPPSMP MNQNPSAINP HHHQSPILFP LPNEYNIEDE IQEEVAESKS CLADVEVKLL
301: GFDAMIKILS RRRPGQLIKA IAALEDMQLS ILHTNITTIE QTVLYSFNVK ISGETRYTAD DIANSIQQIF SFIHAEIAPY DIN

Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.