Factsheet for GSMUA_Achr8P28400_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...	nucleus
GSMUA_Achr11P...
GSMUA_Achr11P...	nucleus
GSMUA_Achr1P03660_001
GSMUA_Achr1P21280_001
GSMUA_Achr1P26300_001	nucleus
GSMUA_Achr3P29310_001
GSMUA_Achr4P03660_001
GSMUA_Achr4P17120_001
GSMUA_Achr5P14780_001
GSMUA_Achr6P30610_001
GSMUA_Achr7P03930_001	nucleus
GSMUA_Achr7P07280_001
GSMUA_Achr8P19330_001
GSMUA_Achr8P34120_001	nucleus
GSMUA_Achr9P21560_001
GSMUA_AchrUn_...	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	GSMUA_Achr8P19330_001	AT1G19980.1	21798944
AT3G24140.1	GSMUA_Achr1P03660_001	AT1G62990.1	21798944
AT3G24140.1	GSMUA_Achr3P29310_001	AT2G30590.1	21798944
AT3G24140.1	GSMUA_Achr4P03660_001	AT2G30590.1	21798944
AT3G24140.1	GSMUA_Achr9P21560_001	AT2G30590.1	21798944
AT3G24140.1	GSMUA_Achr11P...	AT3G25710.1	21798944
AT3G24140.1	GSMUA_Achr1P21280_001	AT3G25710.1	21798944
AT3G24140.1	GSMUA_Achr6P30610_001	AT3G25710.1	21798944
AT3G24140.1	GSMUA_Achr7P07280_001	AT3G25710.1	21798944
AT3G24140.1	GSMUA_Achr4P17120_001	AT4G02770.1	21798944
AT3G24140.1	GSMUA_Achr5P14780_001	AT4G02770.1	21798944
AT3G24140.1	GSMUA_Achr11P...	AT5G46690.1	17088607
AT3G24140.1	GSMUA_Achr11P...	AT5G46690.1	17088607
AT3G24140.1	GSMUA_Achr11P...	AT5G46690.1	21798944
AT3G24140.1	GSMUA_Achr11P...	AT5G46690.1	21798944
AT3G24140.1	GSMUA_Achr1P26300_001	AT5G65640.1	17088607
AT3G24140.1	GSMUA_Achr7P03930_001	AT5G65640.1	17088607
AT3G24140.1	GSMUA_Achr8P34120_001	AT5G65640.1	17088607
AT3G24140.1	GSMUA_AchrUn_...	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P06030_001	Banana	nucleus	81.91	51.1
GSMUA_Achr11P...	Banana	mitochondrion	45.73	48.15
Solyc09g091760.1.1	Tomato	nucleus	58.29	46.96
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	39.7	42.47
GSMUA_Achr7P21110_001	Banana	nucleus	40.7	42.19
GSMUA_Achr9P15000_001	Banana	mitochondrion	41.21	41.21
GSMUA_Achr7P21190_001	Banana	nucleus	40.7	40.91
PGSC0003DMT400076223	Potato	nucleus	58.29	40.7
GSMUA_Achr10P...	Banana	mitochondrion	39.7	39.9
VIT_05s0029g00050.t01	Wine grape	nucleus	74.37	37.28
GSMUA_Achr2P22310_001	Banana	nucleus	42.71	35.12
CDX85167	Canola	nucleus	67.84	34.7
Os05t0586300-00	Rice	nucleus	66.83	34.37
Bra028357.1-P	Field mustard	nucleus	68.84	34.25
Solyc05g053660.1.1	Tomato	nucleus	65.83	34.2
PGSC0003DMT400040761	Potato	nucleus	66.83	34.1
CDX92996	Canola	nucleus	68.84	33.83
Bra001929.1-P	Field mustard	nucleus	68.84	33.83
KRH75571	Soybean	nucleus	72.86	33.8
CDX94841	Canola	nucleus	68.84	33.58
AT3G24140.1	Thale cress	nucleus	69.35	33.33
KRH71094	Soybean	nucleus	73.37	32.74
CDX77460	Canola	nucleus	58.29	32.58
Zm00001d009715_P001	Maize	nucleus	66.83	31.82
Bra028351.1-P	Field mustard	nucleus	55.78	30.83
TraesCS1B01G300100.1	Wheat	nucleus	63.82	30.46
TraesCS1D01G289400.1	Wheat	nucleus	63.82	30.31
TraesCS1A01G290800.1	Wheat	nucleus	63.82	30.24
KXG22636	Sorghum	nucleus	68.34	29.76
GSMUA_Achr10P...	Banana	nucleus	38.19	29.12
CDY64587	Canola	nucleus	54.27	29.11
GSMUA_Achr11P...	Banana	nucleus	43.72	29.0
GSMUA_Achr5P06780_001	Banana	cytosol	41.21	28.98
CDY18083	Canola	nucleus	55.78	28.91
HORVU1Hr1G071330.3	Barley	nucleus	62.31	28.44
GSMUA_Achr8P17650_001	Banana	nucleus	40.2	27.03
GSMUA_Achr6P10290_001	Banana	nucleus	39.2	26.8
GSMUA_Achr5P20300_001	Banana	nucleus	39.2	26.71
GSMUA_Achr11P...	Banana	nucleus	38.19	26.67
GSMUA_Achr5P17900_001	Banana	nucleus	37.69	26.6
GSMUA_Achr8P19870_001	Banana	cytosol, golgi, nucleus	41.21	26.37
GSMUA_Achr5P05450_001	Banana	nucleus	37.19	25.78
GSMUA_Achr10P...	Banana	nucleus	39.7	25.57
GSMUA_Achr7P12790_001	Banana	nucleus	39.2	23.85
GSMUA_Achr11P...	Banana	nucleus	38.19	23.03
GSMUA_Achr6P02150_001	Banana	nucleus	39.7	22.9
GSMUA_Achr8P12330_001	Banana	golgi, vacuole	37.19	20.22

Protein Annotations

EnsemblPlants:GSMUA_Achr8P28400_001	EnsemblPlants:GSMUA_Achr8T28400_001	EnsemblPlantsGene:GSMUA_Achr8G28400_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029557CA	UniProt:M0TUE3	MapMan:15.5.32	:

Description

Transcription factor FAMA [Source:GMGC_GENE;Acc:GSMUA_Achr8G28400_001]

Coordinates

chr8:-:31235247..31236038

Molecular Weight (calculated)

22456.4 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.237

Length

199 amino acids

Sequence
(BLAST)

001: MAHIAVERNR RRQMNEHLRV LRSLMPGSYV KRGDQASIVG GAIELVRELE QLLQRLESQK RRRLFGGGKA PKSVMDGPPL PLQQRHQVNL LDLDHGSRLR
101: EEIAENRSCL ADVEVRLLGF DAMIKILSRR RPRQLIRTIA ALEDLQLAIL HTSIATIEPT VLYSFNVKIS SESLCTAEDI ANSVQRILCF IDANTSSQA

Best Arabidopsis Sequence Match ( AT3G24140.1 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.