Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 29.64 | 32.45 |
| Os04t0117200-01 | Rice | cytosol | 32.05 | 32.13 |
| CDY57605 | Canola | nucleus | 16.63 | 31.51 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 28.67 | 31.23 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 28.67 | 30.99 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 27.95 | 30.29 |
| PGSC0003DMT400025536 | Potato | nucleus | 26.02 | 30.08 |
| Bra016482.1-P | Field mustard | nucleus | 23.86 | 30.0 |
| Solyc04g081450.2.1 | Tomato | nucleus | 25.54 | 29.53 |
| KRH11849 | Soybean | nucleus | 26.99 | 29.24 |
| CDY62942 | Canola | nucleus | 23.13 | 29.09 |
| Bra012201.1-P | Field mustard | nucleus | 23.13 | 28.83 |
| KRH36857 | Soybean | nucleus | 26.51 | 28.72 |
| CDY43422 | Canola | nucleus | 22.41 | 28.62 |
| AT1G19980.1 | Thale cress | nucleus | 23.13 | 28.07 |
| CDX83731 | Canola | nucleus | 23.13 | 27.43 |
| EES02317 | Sorghum | cytosol | 25.78 | 26.68 |
| Zm00001d039489_P002 | Maize | nucleus | 23.86 | 26.61 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 25.3 | 24.19 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 9.88 | 21.47 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 8.92 | 19.89 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 22.65 | 17.5 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 13.73 | 15.24 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 13.49 | 12.58 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 17.11 | 12.28 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 19.04 | 11.35 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 16.14 | 11.32 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 15.42 | 11.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P19330_001 | EnsemblPlants:GSMUA_Achr8T19330_001 | EnsemblPlantsGene:GSMUA_Achr8G19330_001 | ncoils:Coil | PANTHER:PTHR35992 | SEG:seg |
| UniParc:UPI000294E0D4 | UniProt:M0TRT6 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G19330_001]
Coordinates
chr8:+:24298669..24302604
Molecular Weight (calculated)
47258.5 Da
IEP (calculated)
10.194
GRAVY (calculated)
-0.814
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLKNSSSP GSDRRQWQRI FGALVEMVRT QQSQIETLAN DRKFLERYIQ IQHDRWASKA GFLEAHISQM KEEEKKGRRV QATKLDLMLG MKQREALRYK
101: KQFDQAENDL EDFHAYVEAL IAEIAELKEK LKNLEAGGVK SGAGYSKSAE NSEGHKNSAV DLEGEIRKLK HSYKNLSLKK EAEISALLAE KNFVWNQLNK
201: MESDYIVLLK TKQIEITKAA EDMQKLHSNL ENLQSSIIEK GEIITRLEAE RTRLELDLRR YTDEAEKTSN EKEKLHLIVE NLQLLIKEKD ETIEALKSNL
301: AMVEQNVTGC CNRTSRFFIE KGSQRKPRAA VATPQGTRSK RGSGKSSSLC SEVNKMKKQR SAYEASPGSH ASVSTKRLQR CSREKWKKSM SAGSPRLFSS
401: SFKVPKLKST SPRIS
101: KQFDQAENDL EDFHAYVEAL IAEIAELKEK LKNLEAGGVK SGAGYSKSAE NSEGHKNSAV DLEGEIRKLK HSYKNLSLKK EAEISALLAE KNFVWNQLNK
201: MESDYIVLLK TKQIEITKAA EDMQKLHSNL ENLQSSIIEK GEIITRLEAE RTRLELDLRR YTDEAEKTSN EKEKLHLIVE NLQLLIKEKD ETIEALKSNL
301: AMVEQNVTGC CNRTSRFFIE KGSQRKPRAA VATPQGTRSK RGSGKSSSLC SEVNKMKKQR SAYEASPGSH ASVSTKRLQR CSREKWKKSM SAGSPRLFSS
401: SFKVPKLKST SPRIS
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.