Factsheet for PGSC0003DMT400025536

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029374
PGSC0003DMT400035458

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19980.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT1G19980.1	PGSC0003DMT400035458	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081450.2.1	Tomato	nucleus	89.42	89.42
VIT_18s0001g14300.t01	Wine grape	nucleus	43.45	41.16
AT1G19980.1	Thale cress	nucleus	35.65	37.43
Bra016482.1-P	Field mustard	nucleus	32.87	35.76
Bra012201.1-P	Field mustard	nucleus	33.15	35.74
CDY43422	Canola	nucleus	32.03	35.38
CDY62942	Canola	nucleus	32.31	35.15
CDY57605	Canola	nucleus	21.17	34.7
KRH36857	Soybean	nucleus	36.77	34.46
KRH11849	Soybean	nucleus	35.93	33.68
CDX83731	Canola	nucleus	28.97	29.71
GSMUA_Achr8P19330_001	Banana	nucleus	30.08	26.02
TraesCS2D01G008300.2	Wheat	nucleus	25.07	23.5
TraesCS2B01G013500.2	Wheat	nucleus	24.79	23.18
TraesCS2A01G007200.1	Wheat	nucleus	24.51	23.1
Os04t0117200-01	Rice	cytosol	24.51	21.26
EES02317	Sorghum	cytosol	21.17	18.95
Zm00001d039489_P002	Maize	nucleus	18.66	18.01
HORVU2Hr1G001310.16	Barley	cytosol	20.06	16.59
TraesCS1B01G394200.1	Wheat	cytosol, mitochondrion, nucleus	8.36	16.13
TraesCS1A01G373900.2	Wheat	nucleus	7.52	14.14
TraesCS6A01G051100.1	Wheat	nucleus	13.65	13.1
TraesCS1D01G380600.1	Wheat	nucleus	15.04	12.13
TraesCS1B01G393900.3	Wheat	cytosol	16.99	10.55
TraesCS6B01G067600.1	Wheat	nucleus	16.43	10.31
OQU86794	Sorghum	endoplasmic reticulum, nucleus, peroxisome, plastid	15.32	10.24
TraesCS1A01G374100.1	Wheat	cytosol	15.88	9.63
TraesCS1D01G380700.1	Wheat	cytosol	18.38	9.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400025536	EnsemblPlantsGene:PGSC0003DMG400009864	EntrezGene:102598014	ncoils:Coil	PANTHER:PTHR35992	PGSC:PGSC0003DMG400009864
RefSeq:XP_006342052.1	UniParc:UPI000294B9EA	UniProt:M1ALK4	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400009864]

Coordinates

chr4:+:70811925..70815684

Molecular Weight (calculated)

40972.6 Da

IEP (calculated)

9.954

GRAVY (calculated)

-0.843

Length

359 amino acids

Sequence
(BLAST)

001: MAKSKKPKNS SDREKWNKVF NALVHMLKSQ QTQLESLAKE RMILEDRIKL QNDRWVSDID RFQEQIYEMR KEFTIQEMER MLEVAKSEFV VGLKQRDVAV
101: FQRKFENADS ELADFREWFD YLSQKCSEPN DVPRAATNEK SETRKKAWED EVRRLKTENE KLTSEKNSEI SALLAEKDFI WNQFNKLEHD MTEQLRRKCA
201: ELEHANGKIQ AFSRNIEELQ SSNANKDNTI ATLRSQLDNT TATLRSQMAN LESDSVTKSG EISKLSTELA LLKKCGSASV TPVLRRSTTG PGPSKLGGTS
301: RGTDQKYLTV KVEKQSSQAL EKGQRSSKRK AGNSILGAPS LFTSAFKLPK LKMSSPCVT

Best Arabidopsis Sequence Match ( AT1G19980.1 )
(BLAST)

001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI

Arabidopsis Description

Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.