CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus, peroxisome

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99396
EES14698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19980.1	EER99396	AT1G30860.1	21798944
AT1G19980.1	EES14698	AT2G32980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039489_P002	Maize	nucleus	34.26	49.46
EES02317	Sorghum	cytosol	33.33	44.64
Os04t0117200-01	Rice	cytosol	25.7	33.33
TraesCS2D01G008300.2	Wheat	nucleus	21.97	30.81
TraesCS2B01G013500.2	Wheat	nucleus	21.79	30.47
TraesCS2A01G007200.1	Wheat	nucleus	21.6	30.45
TraesCS1B01G394200.1	Wheat	cytosol, mitochondrion, nucleus	8.38	24.19
HORVU2Hr1G001310.16	Barley	cytosol	19.55	24.19
GSMUA_Achr8P19330_001	Banana	nucleus	17.5	22.65
TraesCS1A01G373900.2	Wheat	nucleus	7.26	20.42
Solyc04g081450.2.1	Tomato	nucleus	11.17	16.71
KRH11849	Soybean	nucleus	11.73	16.45
CDY57605	Canola	nucleus	6.7	16.44
CDY62942	Canola	nucleus	10.06	16.36
Bra016482.1-P	Field mustard	nucleus	10.06	16.36
KRH36857	Soybean	nucleus	11.36	15.93
VIT_18s0001g14300.t01	Wine grape	nucleus	11.17	15.83
AT1G19980.1	Thale cress	nucleus	9.87	15.5
PGSC0003DMT400025536	Potato	nucleus	10.24	15.32
TraesCS6A01G051100.1	Wheat	nucleus	10.61	15.24
TraesCS1D01G380600.1	Wheat	nucleus	12.29	14.83
CDY43422	Canola	nucleus	8.94	14.77
Bra012201.1-P	Field mustard	nucleus	9.12	14.71
TraesCS1B01G393900.3	Wheat	cytosol	15.64	14.53
CDX83731	Canola	nucleus	9.31	14.29
TraesCS6B01G067600.1	Wheat	nucleus	14.15	13.29
TraesCS1A01G374100.1	Wheat	cytosol	12.85	11.66
TraesCS1D01G380700.1	Wheat	cytosol	14.34	11.06

Protein Annotations

EnsemblPlants:OQU86794	EnsemblPlantsGene:SORBI_3003G147600	EntrezGene:8060343	ncoils:Coil	ProteinID:OQU86794	ProteinID:OQU86794.1
SEG:seg	UniParc:UPI0009DC90C6	UniProt:A0A1W0VXE4	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr3:+:15348427..15355092

Molecular Weight (calculated)

59500.3 Da

IEP (calculated)

10.940

GRAVY (calculated)

-0.911

Length

537 amino acids

Sequence
(BLAST)

001: MTPGPPLPGC LAKPGPFLFK FRDCQVGPTK IATRSRFLVP GPPHPTVISP PLHAATALLL AAQTAPPQET PSGGRPFRGS ARLPLLSDSS GFHGQRRRRR
101: AGAGTGAGAR AHSGPGLPAR VAPHVRPPRE DAAPGVRAGR GALRRARAPH HRAPVPAERP PRARGDLPGP PPAELAENDL EDFKSCILNL TAENTELKEK
201: LKKFESQMEI CTDNSDHQKS GKDIREEVRK LKKAYKILRS EKDKEISALQ AKKNFVCNQL KTMEEDYRGA IKSKNIEVKQ AQKLLQNVDG LQVASQKKDD
301: EIIRLQVEVT NAKERMSILE DELQKMRSLV KDKGLQTDKN EDDQSDTSKM SKKDIHKANR KSKSTRTCQV TPDISRISQV TPDRQEVKTT RTCASETNQK
401: RKRSCFKSSL SCVSEMSKKD IIKANRKSKS TKTSQVTPDI SRTSQVTPDS QQVKTTRTCA SETNQKRKRS SFRSPLSCVS EMSKKDIIEA NRKSKSTKTS
501: QVTPDRREVK TTRTRASERL RLIRSASIAP SSPPCRV

Best Arabidopsis Sequence Match ( AT1G19980.1 )
(BLAST)

001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI

Arabidopsis Description

Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.