Factsheet for HORVU2Hr1G001310.16

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G048520.1
HORVU7Hr1G106500.1
HORVU7Hr1G106630.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19980.1	HORVU2Hr1G048520.1	AT1G30860.1	21798944
AT1G19980.1	HORVU7Hr1G106500.1	AT2G32980.1	21798944
AT1G19980.1	HORVU7Hr1G106630.1	AT2G32980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G008300.2	Wheat	nucleus	57.83	65.54
TraesCS2A01G007200.1	Wheat	nucleus	56.68	64.57
TraesCS2B01G013500.2	Wheat	nucleus	56.91	64.32
Os04t0117200-01	Rice	cytosol	39.17	41.06
Zm00001d039489_P002	Maize	nucleus	27.65	32.26
EES02317	Sorghum	cytosol	27.88	30.17
GSMUA_Achr8P19330_001	Banana	nucleus	24.19	25.3
Bra016482.1-P	Field mustard	nucleus	18.43	24.24
CDY62942	Canola	nucleus	17.97	23.64
VIT_18s0001g14300.t01	Wine grape	nucleus	19.82	22.69
CDY57605	Canola	nucleus	11.06	21.92
Bra012201.1-P	Field mustard	nucleus	16.59	21.62
CDY43422	Canola	nucleus	16.13	21.54
Solyc04g081450.2.1	Tomato	nucleus	17.28	20.89
AT1G19980.1	Thale cress	nucleus	16.36	20.76
PGSC0003DMT400025536	Potato	nucleus	16.59	20.06
OQU86794	Sorghum	endoplasmic reticulum, nucleus, peroxisome, plastid	24.19	19.55
CDX83731	Canola	nucleus	15.67	19.43
KRH36857	Soybean	nucleus	16.82	19.06
KRH11849	Soybean	nucleus	16.13	18.28

Protein Annotations

EnsemblPlants:HORVU2Hr1G001310.16	EnsemblPlantsGene:HORVU2Hr1G001310	ncoils:Coil	PANTHER:PTHR35992	SEG:seg	UniParc:UPI000B46D844
UniProt:A0A287GVR4	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:2768904..2776810

Molecular Weight (calculated)

47656.8 Da

IEP (calculated)

9.879

GRAVY (calculated)

-0.914

Length

434 amino acids

Sequence
(BLAST)

001: PCPLSRWHSG QKTETPTAST PGSNPSMADG DGDGGGASXX XXXXXXXXXV RVYDRMRAIL VKTHRDVERL LADRTRLEGL LQIQHDFWLR HHAVLSDGLD
101: ETRRVDDCVQ RGDAAMLHQL QDEKDLELRR HRDYIAALTE ENNQLKIKLK EAESCAELSE PSTDPERSGR DLKSELRKLK KAYKALSSQK ETEVSALLAE
201: KDFVWNQFKM MEKDYKALVK KMDKEAAQAT EAAEKLQQKL EELQLQVVAQ KKDDDIGRLQ AEANDAKMKM LALEDKLHKM HSLVSEKDDE IQKLKSGHLQ
301: ASQKQKDING ARRKCRSEGP SVRGKSKGNP RRQIVEEDQP ETSQKRQCPS SLSVRGKSKG NPRRQIVEED QPETSQKRQC PSSLSSGVAL GGRPLHKTHR
401: KPVPSASQQH VLFSANFKVP KLKAPPLLLR SSLI

Best Arabidopsis Sequence Match ( AT1G19980.1 )
(BLAST)

001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI

Arabidopsis Description

Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.