Factsheet for HORVU2Hr1G048520.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G002840.6
HORVU1Hr1G074350.1
HORVU2Hr1G064920.1
HORVU2Hr1G069400.8
HORVU2Hr1G078780.1
HORVU2Hr1G100970.4
HORVU3Hr1G079290.1
HORVU3Hr1G096280.6
HORVU3Hr1G096290.4
HORVU5Hr1G039850.3
HORVU5Hr1G078170.27
HORVU5Hr1G080010.3
HORVU5Hr1G108630.3
HORVU5Hr1G108990.2
HORVU5Hr1G109020.1
HORVU5Hr1G117900.1
HORVU5Hr1G121860.2
HORVU5Hr1G121940.5
HORVU5Hr1G122080.1
HORVU6Hr1G032540.8
HORVU6Hr1G079960.1
HORVU7Hr1G057320.1
HORVU7Hr1G120140.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30860.1	HORVU3Hr1G096280.6	AT1G01630.1	21798944
AT1G30860.1	HORVU3Hr1G096290.4	AT1G01630.1	21798944
AT1G30860.1	HORVU5Hr1G121860.2	AT1G01630.1	21798944
AT1G30860.1	HORVU5Hr1G121940.5	AT1G01630.1	21798944
AT1G30860.1	HORVU5Hr1G122080.1	AT1G01630.1	21798944
AT1G30860.1	HORVU5Hr1G080010.3	AT1G09770.1	21798944
AT1G30860.1	HORVU5Hr1G108630.3	AT1G09770.1	21798944
AT1G30860.1	HORVU6Hr1G032540.8	AT1G61590.1	21798944
AT1G30860.1	HORVU2Hr1G078780.1	AT2G01250.1	21798944
AT1G30860.1	HORVU2Hr1G100970.4	AT2G01250.1	21798944
AT1G30860.1	HORVU5Hr1G108990.2	AT2G01250.1	21798944
AT1G30860.1	HORVU5Hr1G109020.1	AT2G01250.1	21798944
AT1G30860.1	HORVU6Hr1G079960.1	AT2G01250.1	21798944
AT1G30860.1	HORVU7Hr1G057320.1	AT2G01250.1	21798944
AT1G30860.1	HORVU7Hr1G120140.1	AT2G01250.1	21798944
AT1G30860.1	HORVU2Hr1G064920.1	AT2G39760.1	21798944
AT1G30860.1	HORVU5Hr1G078170.27	AT2G43370.1	21798944
AT1G30860.1	HORVU2Hr1G069400.8	AT3G11590.1	21798944
AT1G30860.1	HORVU3Hr1G079290.1	AT3G60360.1	21798944
AT1G30860.1	HORVU1Hr1G002840.6	AT5G09810.1	21798944
AT1G30860.1	HORVU1Hr1G074350.1	AT5G09810.1	21798944
AT1G30860.1	HORVU5Hr1G039850.3	AT5G09810.1	21798944
AT1G30860.1	HORVU5Hr1G117900.1	AT5G09810.1	21798944
AT1G30860.1	HORVU2Hr1G069400.8	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G251300.1	Wheat	nucleus, plastid	74.18	64.99
TraesCS2D01G233500.1	Wheat	cytosol, plastid	74.96	63.67
TraesCS2A01G229600.2	Wheat	nucleus, plastid	60.19	52.37
EER99396	Sorghum	plastid	50.23	41.84
Os07t0499800-01	Rice	nucleus	48.68	41.62
Zm00001d021532_P001	Maize	cytosol, plastid	49.61	41.27
GSMUA_Achr4P33210_001	Banana	nucleus	25.97	30.76
Zm00001d006417_P002	Maize	plastid	25.51	27.94
GSMUA_Achr7P00390_001	Banana	nucleus	28.62	25.31
VIT_01s0010g00340.t01	Wine grape	nucleus	21.77	19.2
Bra005381.1-P	Field mustard	nucleus	18.04	17.9
CDY31650	Canola	nucleus, plastid	17.73	17.7
AT2G34920.2	Thale cress	nucleus	17.88	17.27
Bra021939.1-P	Field mustard	nucleus, plastid	16.33	16.85
CDX84276	Canola	endoplasmic reticulum, extracellular	17.57	16.69
KRH37161	Soybean	nucleus	21.93	15.29
CDY02344	Canola	cytosol	16.17	15.12
Bra023148.1-P	Field mustard	nucleus	16.49	15.04
AT1G30860.1	Thale cress	cytosol	16.8	14.79
CDX96975	Canola	cytosol	15.71	14.7
CDY09519	Canola	nucleus	16.33	14.64
Bra039871.1-P	Field mustard	nucleus	15.86	14.53
KRH12155	Soybean	nucleus	20.53	14.39
CDY52188	Canola	nucleus	15.24	14.31
CDY12454	Canola	nucleus	13.84	13.8
Solyc10g005220.2.1	Tomato	nucleus, plastid	19.6	13.38
PGSC0003DMT400029374	Potato	nucleus, plastid	20.22	13.18
PGSC0003DMT400035458	Potato	nucleus	20.53	12.75
Solyc02g082100.2.1	Tomato	vacuole	18.97	11.32
AT5G44690.1	Thale cress	nucleus	11.04	10.73
CDY14941	Canola	nucleus	10.11	10.47
CDY50063	Canola	cytosol	17.73	10.37
CDX78978	Canola	cytosol	17.42	9.89
AT4G20160.2	Thale cress	cytosol	17.88	9.48
Bra013447.1-P	Field mustard	nucleus	17.42	9.06
HORVU6Hr1G092920.1	Barley	cytosol	7.31	7.32
HORVU4Hr1G086680.2	Barley	mitochondrion	4.2	6.21
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	4.35	5.11

Protein Annotations

EnsemblPlants:HORVU2Hr1G048520.1	EnsemblPlantsGene:HORVU2Hr1G048520	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF11	PFAM:PF13920	PFscan:PS50089
SEG:seg	SUPFAM:SSF57850	UniParc:UPI000B4653EF	UniProt:A0A287HYE9	MapMan:35.2	:

Description

No Description!

Coordinates

chrchr2H:+:271528453..271534069

Molecular Weight (calculated)

70393.2 Da

IEP (calculated)

6.835

GRAVY (calculated)

-0.755

Length

643 amino acids

Sequence
(BLAST)

001: MRNGSFQSPC RPAAENSIAK PQSQDRRNRG GGSFSSSSLL IFATAHASSR HHCPFLACPD PSPHGLFPGR HAQRLRTMEG HLHLHLHLQA QALLQRQRPH
101: TAAAPLXXXX XXXXXXXXXX XXXXXXPPKL VVRTVRGRRA VEELVARMAH RRRRELAALA ERHAVTRFGH KGRIQSMLRL KLLRHGDAIN DEVWNLLRPV
201: RPHPPKCGPE ALRDDSRKSD SQDANECNLQ NNRADEQHSD DRNPSVEKST GLAIESLVNS DGSGNRQYDE KIDSKGNQCL EDRVNLVNSC VHNQECSKAS
301: SFASYNDHRA VYDNQYVDDI SPSTISTSCE LQETPSSRGE TLREEDNQSL NGSWDERALW MSSLGWPAPV DSMSPDSWHQ GTIGDMENHN QIEFNDRPWI
401: DSPNSWRSLH ITTQADCRDL SGNADICNLL ESKKVSKSLE SDFSSKMNHL LRAVLQKQRQ QHMIDDFGGY YPEHLYWQQN DEPRNEDQVA SAPCSLAPVS
501: HVTAHHQENW QHPSFEHQQH ENQNLLEMEV RVRSEMAQIH HEIYELRKLA ESCIASQVKM QHSIKEEVCS ALREAGLMPS QPDITAKKGT CCICHEMQVD
601: SLLYRCGHMC TCFNCADQLK SSSGSCPICE SSIDDVVRAH LNF

Best Arabidopsis Sequence Match ( AT2G27950.1 )
(BLAST)

001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL

Arabidopsis Description

Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.