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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000066.1-P
Bra000147.1-P
Bra000304.1-P
Bra001412.1-P
Bra002404.1-P
Bra002437.1-P
Bra002438.1-P
Bra005103.1-P
Bra006033.1-P
Bra006620.1-P
Bra007528.1-P
Bra009081.1-P
Bra014334.1-P
Bra014494.1-P
Bra017053.1-P
Bra017461.1-P
Bra019993.1-P
Bra020223.1-P
Bra020224.1-P
Bra024895.1-P
Bra026274.1-P
Bra027160.1-P
Bra028615.1-P
Bra030798.1-P
Bra031421.1-P
Bra032645.1-P
Bra033247.1-P
Bra034827.1-P
Bra038591.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30860.1 Bra032645.1-P AT1G01630.1 21798944
AT1G30860.1 Bra033247.1-P AT1G01630.1 21798944
AT1G30860.1 Bra019993.1-P AT1G09770.1 21798944
AT1G30860.1 Bra027160.1-P AT1G09770.1 21798944
AT1G30860.1 Bra030798.1-P AT1G09770.1 21798944
AT1G30860.1 Bra031421.1-P AT1G61590.1 21798944
AT1G30860.1 Bra038591.1-P AT1G61590.1 21798944
AT1G30860.1 Bra014334.1-P AT2G01250.1 21798944
AT1G30860.1 Bra017461.1-P AT2G01250.1 21798944
AT1G30860.1 Bra024895.1-P AT2G01250.1 21798944
AT1G30860.1 Bra000066.1-P AT2G38490.1 21798944
AT1G30860.1 Bra005103.1-P AT2G38490.1 21798944
AT1G30860.1 Bra000147.1-P AT2G39760.1 21798944
AT1G30860.1 Bra017053.1-P AT2G39760.1 21798944
AT1G30860.1 Bra000304.1-P AT2G43370.1 21798944
AT1G30860.1 Bra001412.1-P AT3G11590.1 21798944
AT1G30860.1 Bra034827.1-P AT3G11590.1 21798944
AT1G30860.1 Bra007528.1-P AT3G60360.1 21798944
AT1G30860.1 Bra014494.1-P AT3G60360.1 21798944
AT1G30860.1 Bra026274.1-P AT4G28230.1 21798944
AT1G30860.1 Bra006033.1-P AT5G09810.1 21798944
AT1G30860.1 Bra009081.1-P AT5G09810.1 21798944
AT1G30860.1 Bra028615.1-P AT5G09810.1 21798944
AT1G30860.1 Bra002404.1-P AT5G22310.1 21798944
AT1G30860.1 Bra006620.1-P AT5G22310.1 21798944
AT1G30860.1 Bra002437.1-P AT5G22890.1 21798944
AT1G30860.1 Bra002438.1-P AT5G22890.1 21798944
AT1G30860.1 Bra020223.1-P AT5G22890.1 21798944
AT1G30860.1 Bra020224.1-P AT5G22890.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY02344 Canola cytosol 78.16 80.09
Bra039871.1-P Field mustard nucleus 43.55 43.73
AT1G30860.1 Thale cress cytosol 43.83 42.33
Bra005381.1-P Field mustard nucleus 36.03 39.2
Bra021939.1-P Field mustard nucleus, plastid 31.91 36.12
GSMUA_Achr4P33210_001 Banana nucleus 18.3 23.76
VIT_01s0010g00340.t01 Wine grape nucleus 22.84 22.09
KRH37161 Soybean nucleus 27.38 20.93
GSMUA_Achr7P00390_001 Banana nucleus 21.13 20.5
KRH12155 Soybean nucleus 26.38 20.28
Solyc10g005220.2.1 Tomato nucleus, plastid 23.4 17.52
PGSC0003DMT400035458 Potato nucleus 24.96 17.0
Bra013447.1-P Field mustard nucleus 29.5 16.83
TraesCS2A01G229600.2 Wheat nucleus, plastid 17.59 16.78
PGSC0003DMT400029374 Potato nucleus, plastid 23.4 16.73
HORVU2Hr1G048520.1 Barley plastid 15.04 16.49
Solyc02g082100.2.1 Tomato vacuole 24.54 16.05
Zm00001d021532_P001 Maize cytosol, plastid 16.74 15.27
TraesCS2D01G233500.1 Wheat cytosol, plastid 16.31 15.19
EER99396 Sorghum plastid 16.6 15.16
TraesCS2B01G251300.1 Wheat nucleus, plastid 15.74 15.12
Os07t0499800-01 Rice nucleus 15.46 14.49
Zm00001d006417_P002 Maize plastid 12.06 14.48
Bra034121.1-P Field mustard nucleus 9.79 8.62
Bra029846.1-P Field mustard nucleus 9.22 8.41
Bra009452.1-P Field mustard nucleus 9.22 7.77
Bra011990.1-P Field mustard nucleus, plastid 7.38 6.81
Os03t0107500-00 Rice plasma membrane 1.7 3.29
Protein Annotations
EnsemblPlants:Bra023148.1EnsemblPlants:Bra023148.1-PEnsemblPlantsGene:Bra023148Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDncoils:CoilPANTHER:PTHR10044PANTHER:PTHR10044:SF103PFAM:PF13920
PFscan:PS50089SEG:segSUPFAM:SSF57850UniParc:UPI000254246EUniProt:M4E2Z7MapMan:35.2
Description
AT1G30860 (E=9e-216) | protein binding / zinc ion binding
Coordinates
chrA09:+:21241345..21243846
Molecular Weight (calculated)
80362.3 Da
IEP (calculated)
5.598
GRAVY (calculated)
-0.947
Length
705 amino acids
Sequence
(BLAST)
001: MEISSSSQRF GCILRDRNQN AFVCKKNLKA PVKDRHHHRH HHELFKSHVS DENSENLVDS WIEALNKKND SNNGIVRLTG KPTVRKSRVS ASLPIEESVS
101: RKEKCDESKR NNGASSLVQI WEARLNPSSG GNSPSHNQST VASSIRGDSG DSVQDSCFSE SPSDESEAEN GHVEMESRSQ GSVSDSGRVA DLIRRLSNEK
201: KLIARGGGLS TIKTPRPYIS SEKSSFPIIG CSPRLRGRQA FTDLLMRMER DRHRELDSLH QRNAVSKFTQ RGRLQSMLRL RNLKRCLAIH DQYRSNEKTT
301: RLNRIEPGSA VLRLREKFRA NAVNADTSKE TEVATERTGL KKGGINQEAS FATAGTTLCK EEETVNGTVE ADVDCLELQE TRGAKTWNDN KFEDKEEITS
401: QIEIKMENCV QEAPETQGVG HESNEMDQCL EKQETSYMNG WEDQEEYEEE QYYYREANND WLSEISRPRS YWEELRKSRY LEVMNTRSEK EDIRRLLERR
501: TVTDFLESGL REEIDRLMMS RVQTHSNKSC QKWEQEEEQN NEADEKEEPL TEGEEQDDRD DDSSRASSHI FASSPAGSWS SQDTEVTSST PVLSVHNSPS
601: PEMELISDMR AQIQQLHQEM SLLRDSVKTC LDANASLQQS FHGENPMKRK CCVCDETQVE AVLYMCGHMC TCLKCANELH WSGGKCPICR AQIMDVVRVF
701: FDTRN
Best Arabidopsis Sequence Match ( AT1G30860.1 )
(BLAST)
001: MVSSPQRFGL ILRDRNQNAG VFQKNLKSPV KEVLKSHVSD ENLVDSWIET HNNKNNRVLE SPLESKRNDN LVASSLVQIW EARLNRSNGG NSPSSSQSTA
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
Arabidopsis Description
At1g30860 [Source:UniProtKB/TrEMBL;Acc:Q6NQ80]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.