Factsheet for Bra000147.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000147.1-P
Bra003173.1-P
Bra003174.1-P
Bra005888.1-P
Bra006255.1-P
Bra006591.1-P
Bra007052.1-P
Bra007530.1-P
Bra009178.1-P
Bra013635.1-P
Bra014973.1-P
Bra015289.1-P
Bra016291.1-P
Bra017053.1-P
Bra018971.1-P
Bra020142.1-P
Bra020834.1-P
Bra023466.1-P
Bra024680.1-P
Bra028737.1-P
Bra030378.1-P
Bra036892.1-P
Bra039719.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39760.1	Bra015289.1-P	AT1G04100.1	21798944
AT2G39760.1	Bra016291.1-P	AT1G26830.1	15618422
AT2G39760.1	Bra024680.1-P	AT1G26830.1	15618422
AT2G39760.1	Bra016291.1-P	AT1G26830.1	15659098
AT2G39760.1	Bra024680.1-P	AT1G26830.1	15659098
AT2G39760.1	Bra016291.1-P	AT1G26830.1	15772280
AT2G39760.1	Bra024680.1-P	AT1G26830.1	15772280
AT2G39760.1	Bra018971.1-P	AT1G52540.1	21798944
AT2G39760.1	Bra030378.1-P	AT1G52540.1	21798944
AT2G39760.1	Bra000147.1-P	AT2G39760.1	15618422
AT2G39760.1	Bra017053.1-P	AT2G39760.1	15618422
AT2G39760.1	Bra000147.1-P	AT2G39760.1	21798944
AT2G39760.1	Bra017053.1-P	AT2G39760.1	21798944
AT2G39760.1	Bra014973.1-P	AT3G23700.1	21798944
AT2G39760.1	Bra003173.1-P	AT3G54170.1	21798944
AT2G39760.1	Bra003174.1-P	AT3G54170.1	21798944
AT2G39760.1	Bra007052.1-P	AT3G54170.1	21798944
AT2G39760.1	Bra007530.1-P	AT3G60390.1	21798944
AT2G39760.1	Bra036892.1-P	AT4G14740.1	21798944
AT2G39760.1	Bra039719.1-P	AT4G14740.1	21798944
AT2G39760.1	Bra013635.1-P	AT4G22720.1	21798944
AT2G39760.1	Bra020834.1-P	AT4G22720.1	21798944
AT2G39760.1	Bra005888.1-P	AT5G06270.1	21798944
AT2G39760.1	Bra009178.1-P	AT5G06270.1	21798944
AT2G39760.1	Bra028737.1-P	AT5G06270.1	21798944
AT2G39760.1	Bra006255.1-P	AT5G14440.1	21798944
AT2G39760.1	Bra023466.1-P	AT5G14440.1	21798944
AT2G39760.1	Bra006591.1-P	AT5G21010.1	15618422
AT2G39760.1	Bra020142.1-P	AT5G21010.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07638	Canola	cytosol	99.48	95.0
Bra017053.1-P	Field mustard	cytosol	85.34	81.7
AT2G39760.1	Thale cress	cytosol	83.51	78.19
VIT_13s0019g02260.t01	Wine grape	cytosol	68.06	64.04
GSMUA_Achr10P...	Banana	cytosol	31.15	62.96
GSMUA_Achr7P10650_001	Banana	cytosol	65.71	61.98
Solyc05g052960.2.1	Tomato	cytosol	65.97	61.76
PGSC0003DMT400069942	Potato	cytosol	65.97	61.76
KRH31032	Soybean	nucleus	66.75	61.45
KRG97837	Soybean	cytosol	66.49	61.35
TraesCS2D01G266900.1	Wheat	cytosol	59.16	57.07
TraesCS2A01G255800.1	Wheat	cytosol	59.16	57.07
Os07t0101400-01	Rice	cytosol	58.64	56.71
EER97813	Sorghum	plastid	58.38	55.47
Bra001186.1-P	Field mustard	cytosol	56.81	53.85
Bra040233.1-P	Field mustard	cytosol	54.45	53.47
Bra006489.1-P	Field mustard	cytosol	55.24	52.36
HORVU2Hr1G064920.1	Barley	plastid	58.9	52.33
Bra020764.1-P	Field mustard	cytosol	52.62	52.21
Bra002200.1-P	Field mustard	cytosol	54.19	51.75
Zm00001d007888_P002	Maize	plastid	55.5	49.3
Bra006591.1-P	Field mustard	plastid	50.52	47.07
Bra036437.1-P	Field mustard	plastid	54.71	46.86
Bra020142.1-P	Field mustard	plastid	49.74	45.78

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
EnsemblPlantsGene:Bra000147	EnsemblPlants:Bra000147.1	EnsemblPlants:Bra000147.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	UniProt:M4C7G9	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFAM:PF00917	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF54	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI00025401F3

Description

AT2G39760 (E=3e-185) ATBPM3, BPM3 | BPM3; protein binding

Coordinates

chrA03:+:9551542..9554300

Molecular Weight (calculated)

42188.6 Da

IEP (calculated)

7.221

GRAVY (calculated)

-0.095

Length

382 amino acids

Sequence
(BLAST)

001: METVNGSHQF TIKGYSLAKG MGPGRYIQSD VFSIAGYDWA IYFYPDGKNP EDNSAYVSFF IALASDSSDI RALFELTLMD QSGKGRHKVH SHFDRTLEGG
101: PYTLKCKGSM WGYKRFLRRT ALEASDYLKD DSLVINCTVG VVRARLEVPK QFGVVLPSSD MGQGLKDLID SEVGCDIAFQ VGDETYKAHK LILAARSPVF
201: RAQFYGPIGN NNVERIVIED IEPSIFKAML SFIYTDGLPD VHEITGSASA SLITNMIQHL LAAADLYDLG RLKVLCEVFL CEKLNVDNVA TTLALAEQHQ
301: LSELKAFCLK FVTSPGNLRA VMKSEGFKHL NQSCPSMLSE LLSTVAAGDK ILTSEQASKK RSLCSSVLAY DTNAARQLRR RT

Best Arabidopsis Sequence Match ( AT2G39760.1 )
(BLAST)

001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS

Arabidopsis Description

BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.