Factsheet for Bra017053.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000147.1-P
Bra003173.1-P
Bra003174.1-P
Bra005888.1-P
Bra006255.1-P
Bra006591.1-P
Bra007052.1-P
Bra007530.1-P
Bra009178.1-P
Bra013635.1-P
Bra014973.1-P
Bra015289.1-P
Bra016291.1-P
Bra017053.1-P
Bra018971.1-P
Bra020142.1-P
Bra020834.1-P
Bra023466.1-P
Bra024680.1-P
Bra028737.1-P
Bra030378.1-P
Bra036892.1-P
Bra039719.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39760.1	Bra015289.1-P	AT1G04100.1	21798944
AT2G39760.1	Bra016291.1-P	AT1G26830.1	15618422
AT2G39760.1	Bra024680.1-P	AT1G26830.1	15618422
AT2G39760.1	Bra016291.1-P	AT1G26830.1	15659098
AT2G39760.1	Bra024680.1-P	AT1G26830.1	15659098
AT2G39760.1	Bra016291.1-P	AT1G26830.1	15772280
AT2G39760.1	Bra024680.1-P	AT1G26830.1	15772280
AT2G39760.1	Bra018971.1-P	AT1G52540.1	21798944
AT2G39760.1	Bra030378.1-P	AT1G52540.1	21798944
AT2G39760.1	Bra000147.1-P	AT2G39760.1	15618422
AT2G39760.1	Bra017053.1-P	AT2G39760.1	15618422
AT2G39760.1	Bra000147.1-P	AT2G39760.1	21798944
AT2G39760.1	Bra017053.1-P	AT2G39760.1	21798944
AT2G39760.1	Bra014973.1-P	AT3G23700.1	21798944
AT2G39760.1	Bra003173.1-P	AT3G54170.1	21798944
AT2G39760.1	Bra003174.1-P	AT3G54170.1	21798944
AT2G39760.1	Bra007052.1-P	AT3G54170.1	21798944
AT2G39760.1	Bra007530.1-P	AT3G60390.1	21798944
AT2G39760.1	Bra036892.1-P	AT4G14740.1	21798944
AT2G39760.1	Bra039719.1-P	AT4G14740.1	21798944
AT2G39760.1	Bra013635.1-P	AT4G22720.1	21798944
AT2G39760.1	Bra020834.1-P	AT4G22720.1	21798944
AT2G39760.1	Bra005888.1-P	AT5G06270.1	21798944
AT2G39760.1	Bra009178.1-P	AT5G06270.1	21798944
AT2G39760.1	Bra028737.1-P	AT5G06270.1	21798944
AT2G39760.1	Bra006255.1-P	AT5G14440.1	21798944
AT2G39760.1	Bra023466.1-P	AT5G14440.1	21798944
AT2G39760.1	Bra006591.1-P	AT5G21010.1	15618422
AT2G39760.1	Bra020142.1-P	AT5G21010.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07031	Canola	cytosol	99.5	99.5
CDX93238	Canola	cytosol	97.74	98.48
Bra000147.1-P	Field mustard	cytosol	81.7	85.34
AT2G39760.1	Thale cress	cytosol	84.71	82.84
VIT_13s0019g02260.t01	Wine grape	cytosol	67.17	66.01
Solyc05g052960.2.1	Tomato	cytosol	66.17	64.71
PGSC0003DMT400069942	Potato	cytosol	66.17	64.71
GSMUA_Achr7P10650_001	Banana	cytosol	64.66	63.7
GSMUA_Achr10P...	Banana	cytosol	29.82	62.96
KRH31032	Soybean	nucleus	65.16	62.65
KRG97837	Soybean	cytosol	64.91	62.56
TraesCS2D01G266900.1	Wheat	cytosol	58.65	59.09
TraesCS2A01G255800.1	Wheat	cytosol	58.65	59.09
Os07t0101400-01	Rice	cytosol	58.15	58.73
CDX93236	Canola	cytosol	58.65	57.35
EER97813	Sorghum	plastid	57.39	56.97
Bra001186.1-P	Field mustard	cytosol	56.14	55.58
Bra040233.1-P	Field mustard	cytosol	53.63	55.01
Bra006489.1-P	Field mustard	cytosol	55.39	54.84
Bra002200.1-P	Field mustard	cytosol	54.64	54.5
HORVU2Hr1G064920.1	Barley	plastid	58.4	54.19
Bra020764.1-P	Field mustard	cytosol	51.13	52.99
Zm00001d007888_P002	Maize	plastid	54.14	50.23
Bra006591.1-P	Field mustard	plastid	49.87	48.54
Bra036437.1-P	Field mustard	plastid	53.38	47.76
Bra020142.1-P	Field mustard	plastid	48.37	46.51

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
EnsemblPlantsGene:Bra017053	EnsemblPlants:Bra017053.1	EnsemblPlants:Bra017053.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	UniProt:M4DKM2	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF54	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061
SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI0002544D65	SEG:seg

Description

AT2G39760 (E=1e-188) ATBPM3, BPM3 | BPM3; protein binding

Coordinates

chrA04:+:16890593..16892533

Molecular Weight (calculated)

43905.3 Da

IEP (calculated)

7.077

GRAVY (calculated)

-0.167

Length

399 amino acids

Sequence
(BLAST)

001: MSASHPNHDS VSTTVMETVN GSHQFTIKGY SLAKGMSPGR YIQSDVFSVN GYDWVIYFYP DGKNPEENST YVSLFIALAS DSSDIRALFE LTLMDQSGRG
101: RHKVHSHFDR ALEGGPYTLK YKGSMWGYKR FLRRTALEAS DYLKDDCLII NCTVGVVRAR LEGPKQFGIV PPPSNMGQGL KDLLDSELGC DIAFQVGDET
201: YKAHKLILAA RSPVFRAQFY GPVGNNSVDR VVIEDMEPSI FKAMLSFIYT DVLPDVHEIT GSTSTASFTN MIQHLLAAAD LYDLGRLKIL CEAFLCEELN
301: VDNVATTLAL ADQHQFLQLK AFCLKFVASP ANLRAVMKSE GFKHLNQSCP SVLPELLNTV AAADKSSTSS SGQSSKKRSV SSVLGCDTST TNARQVRRT

Best Arabidopsis Sequence Match ( AT2G39760.1 )
(BLAST)

001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS

Arabidopsis Description

BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.