Factsheet for VIT_13s0019g02260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s2082g00010.t01
VIT_01s0026g02230.t01
VIT_05s0020g03470.t01
VIT_05s0020g04020.t01
VIT_05s0062g00830.t01
VIT_06s0009g01030.t01
VIT_08s0007g02600.t01
VIT_09s0002g07060.t01
VIT_13s0019g02260.t01
VIT_14s0066g00260.t01
VIT_17s0000g08940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39760.1	VIT_01s0026g02230.t01	AT1G26830.1	15618422
AT2G39760.1	VIT_01s0026g02230.t01	AT1G26830.1	15659098
AT2G39760.1	VIT_01s0026g02230.t01	AT1G26830.1	15772280
AT2G39760.1	VIT_09s0002g07060.t01	AT1G52540.1	21798944
AT2G39760.1	VIT_01s0026g02230.t01	AT1G69670.1	15618422
AT2G39760.1	VIT_01s0026g02230.t01	AT1G69670.1	15659098
AT2G39760.1	VIT_13s0019g02260.t01	AT2G39760.1	15618422
AT2G39760.1	VIT_13s0019g02260.t01	AT2G39760.1	21798944
AT2G39760.1	VIT_05s0062g00830.t01	AT3G23700.1	21798944
AT2G39760.1	VIT_06s0009g01030.t01	AT3G43700.1	15618422
AT2G39760.1	VIT_17s0000g08940.t01	AT3G54170.1	21798944
AT2G39760.1	VIT_05s0020g04020.t01	AT4G14740.1	21798944
AT2G39760.1	VIT_05s0020g03470.t01	AT4G14900.1	21798944
AT2G39760.1	VIT_00s2082g00010.t01	AT4G22720.1	21798944
AT2G39760.1	VIT_08s0007g02600.t01	AT5G06270.1	21798944
AT2G39760.1	VIT_14s0066g00260.t01	AT5G14440.1	21798944
AT2G39760.1	VIT_06s0009g01030.t01	AT5G21010.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052960.2.1	Tomato	cytosol	77.34	76.96
PGSC0003DMT400069942	Potato	cytosol	77.34	76.96
KRG97837	Soybean	cytosol	73.89	72.46
KRH31032	Soybean	nucleus	73.89	72.29
GSMUA_Achr7P10650_001	Banana	cytosol	69.7	69.88
Bra000147.1-P	Field mustard	cytosol	64.04	68.06
CDX93238	Canola	cytosol	65.76	67.42
Bra017053.1-P	Field mustard	cytosol	66.01	67.17
CDY07031	Canola	cytosol	65.52	66.67
AT2G39760.1	Thale cress	cytosol	66.5	66.18
TraesCS2D01G266900.1	Wheat	cytosol	64.53	66.16
TraesCS2A01G255800.1	Wheat	cytosol	64.53	66.16
CDY07638	Canola	cytosol	65.02	66.0
Os07t0101400-01	Rice	cytosol	63.79	65.57
GSMUA_Achr10P...	Banana	cytosol	29.8	64.02
VIT_07s0104g00570.t01	Wine grape	cytosol	62.81	63.43
EER97813	Sorghum	plastid	62.32	62.94
CDY61778	Canola	cytosol	65.27	62.8
VIT_05s0020g02520.t01	Wine grape	plastid	60.84	60.54
HORVU2Hr1G064920.1	Barley	plastid	63.55	60.0
VIT_06s0009g01030.t01	Wine grape	cytosol	57.88	55.56
Zm00001d007888_P002	Maize	plastid	56.9	53.72
VIT_08s0056g01670.t01	Wine grape	plastid	55.66	52.44
CDX93236	Canola	cytosol	40.15	39.95

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100263350	wikigene:100263350	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1
InterPro:BPM_C	InterPro:BTB/POZ_dom	ProteinID:CCB56312	ProteinID:CCB56312.1	UniProt:F6HNU2	EMBL:FN595998
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006950	GO:GO:0006970
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0031396
GO:GO:0042802	GO:GO:0071472	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	EntrezGene:LOC100263350
wikigene:LOC100263350	InterPro:MATH/TRAF_dom	PFAM:PF00651	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411
PANTHER:PTHR24411:SF54	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695
TIGR:TC59642	InterPro:TRAF-like	UniParc:UPI0001984864	ArrayExpress:VIT_13s0019g02260	EnsemblPlantsGene:VIT_13s0019g02260	EnsemblPlants:VIT_13s0019g02260.t01
unigene:Vvi.531	RefSeq:XP_002282536	RefSeq:XP_002282536.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:3523098..3534080

Molecular Weight (calculated)

44528.5 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.062

Length

406 amino acids

Sequence
(BLAST)

001: MVNSKADIER DSCSKSINET VNGSHHFLIK GYSLAKGMGA GKYISSDTFT VGGYDWAIYF YPDGKNAEDN SMYVSVFIAL ASEGTDVRAL FELTLLDQSG
101: KGKHKVHSHF DRALESGPYT LKYRGSMWGY KRFFRRTTLE TSDFIKDDCL AMHCTVGVVR TRVEGPKQYT IPIPPSDIGQ SLKDLLESEV GCDITFQVAD
201: ETFKAHKLIL AARSPVFRAQ FFGLVGNPNM DKVVVEDVEP SIFKAMLLFI YSDKLPDVDE ITGSASVCTS TIMVQHLLAA ADRFGLDRLK LLCESKLCKE
301: VSAETVATTL ALAEQHRCPQ LKAICLKFAA TPSILGAVMQ SEGFGYLEEC CPSLLSELLG VIASVDENLT MLSSKKRSGS SILGLDLPAD GAPAESASGR
401: RIRRRF

Best Arabidopsis Sequence Match ( AT2G39760.1 )
(BLAST)

001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS

Arabidopsis Description

BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.