Factsheet for VIT_05s0062g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	56.15	71.1
KRH31544	Soybean	plastid	67.18	67.88
KRG97374	Soybean	nucleus	64.62	66.67
PGSC0003DMT400042869	Potato	plastid	64.62	65.45
Solyc09g097910.2.1	Tomato	nucleus	64.1	64.1
CDX85123	Canola	plastid	58.21	60.7
CDX77487	Canola	plastid	58.97	60.69
Bra014973.1-P	Field mustard	plastid	59.23	60.47
AT3G23700.1	Thale cress	plastid	59.23	58.93
EER90528	Sorghum	plastid	51.54	54.92
TraesCS4A01G340600.1	Wheat	plastid	50.26	52.97
TraesCS5D01G532100.1	Wheat	plastid	49.74	52.43
Zm00001d034828_P002	Maize	plastid	50.26	52.27
Os03t0844900-01	Rice	plasma membrane	38.21	43.95
TraesCS5B01G534400.1	Wheat	plastid	47.95	43.49
HORVU5Hr1G120650.5	Barley	nucleus	51.28	41.07
VIT_02s0025g03970.t01	Wine grape	plastid	24.62	12.42

Protein Annotations

EntrezGene:100244532	wikigene:100244532	Gene3D:2.40.50.140	MapMan:35.1	EMBL:AM476797	ProteinID:CAN68483
ProteinID:CAN68483.1	ProteinID:CBI39420	ProteinID:CBI39420.3	UniProt:D7U9K6	EMBL:FN596745	GO:GO:0000462
GO:GO:0000466	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	InterPro:IPR003029	EntrezGene:LOC100244532	wikigene:LOC100244532
InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270	InterPro:S1_dom	InterPro:S1_domain
SMART:SM00316	SUPFAM:SSF50249	TIGR:TC70186	UniParc:UPI00015CBE9B	ArrayExpress:VIT_05s0062g00830	EnsemblPlantsGene:VIT_05s0062g00830
EnsemblPlants:VIT_05s0062g00830.t01	unigene:Vvi.7285	RefSeq:XP_002264430	RefSeq:XP_002264430.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:19249664..19262383

Molecular Weight (calculated)

43235.6 Da

IEP (calculated)

5.966

GRAVY (calculated)

-0.198

Length

390 amino acids

Sequence
(BLAST)

001: MIFSGASGSV TGLSILSKLF CWDSSSNTNS SASLLINPSK ISSFYRRSPL RRSPFHIATA RVSTEGSEQA TAGVVEGSPP PPFDAIRQAR RSADWKAARA
101: HLESGFIYEG RIEGFNGGGL LVRFYSLVGF LPFPQLSPSH SCKEPHKTIQ EIAKGLIGSL ISVKVILADE EKRKLIFSEK EAAWLKFSKQ INIGDIFEAM
201: VGSVEDYGAF VHLRFPDGLY HLTGLVHVSE VSWDLVQDVR DVLNEGDEVR VKIVKVDRVK SRITLSIKQL EEDPLLETLD KVIPQDGSTG PDSLRTSDSY
301: DIEPLPGLET IFEELLQEEG ISDVRISRQG FEKRVVSQDL QLWLSNAPAV DKQFTLLARA GRQVQEIQLT TSLDQEGIKK ALQRVLERVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.