Factsheet for Os03t0844900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90528	Sorghum	plastid	65.19	60.38
Zm00001d034828_P002	Maize	plastid	66.08	59.73
TraesCS5D01G532100.1	Wheat	plastid	61.36	56.22
TraesCS4A01G340600.1	Wheat	plastid	61.36	56.22
GSMUA_Achr11P...	Banana	mitochondrion	43.95	48.38
TraesCS5B01G534400.1	Wheat	plastid	58.7	46.28
HORVU5Hr1G120650.5	Barley	nucleus	60.77	42.3
VIT_05s0062g00830.t01	Wine grape	plastid	43.95	38.21
KRG97374	Soybean	nucleus	41.59	37.3
PGSC0003DMT400042869	Potato	plastid	42.18	37.14
KRH31544	Soybean	plastid	41.89	36.79
Solyc09g097910.2.1	Tomato	nucleus	42.18	36.67
CDX85123	Canola	plastid	39.23	35.56
CDX77487	Canola	plastid	39.23	35.09
Bra014973.1-P	Field mustard	plastid	39.53	35.08
AT3G23700.1	Thale cress	plastid	40.12	34.69
Os02t0115600-01	Rice	plastid	19.17	8.14

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	ProteinID:AAS07357.1	ProteinID:ABF99859.1	EMBL:AK100284	ProteinID:BAF13789.1
ProteinID:BAS87334.1	GO:GO:0000462	GO:GO:0000466	GO:GO:0000481	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0032040	GO:GO:0032508	GO:GO:0034337	InterPro:IPR003029	InterPro:NA-bd_OB-fold	EnsemblPlantsGene:Os03g0844900
EnsemblPlants:Os03t0844900-01	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR10724	PANTHER:PTHR10724:SF7	UniProt:Q75LC0
InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249	TMHMM:TMhelix	UniParc:UPI000023948D
SEG:seg	:	:	:	:	:

Description

Nucleic acid-binding, OB-fold-like domain containing protein. (Os03t0844900-01)

Coordinates

chr3:-:35520662..35523897

Molecular Weight (calculated)

36863.9 Da

IEP (calculated)

4.693

GRAVY (calculated)

0.069

Length

339 amino acids

Sequence
(BLAST)

001: MLAAAAAALR PAPTTAAFSP STARSPPPTL LSFAPPRSHQ RFHLSATAEG AGTTAAQEGA SASASAPPVD EARLAQFAAD WQAARAERDQ GKILKLQVIR
101: ANSGGLIVRF NSLQGFVPNP LLSPAHWCKD PKRPIQDVTK DLVGSSISVK VVEVNEEERK LVFSEKDASW FTHSSLVKIG AIYDGIVGSV FHYGAFVHLR
201: FPDGNYHLTG LVHISEVSWD LVQDVRDFLN EGDTVKVIVV NIDMEKSRIA LSIRQLEEDP LLETLDKVIP LEADQSPSAG IISSDSSPSE ADLLPGLDGI
301: CNELLQEDGY DFCLCVFFFL VYGFLMLMYY FMCPVALLD

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.