CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034828_P002	Maize	plastid	91.8	89.6
TraesCS5D01G532100.1	Wheat	plastid	71.04	70.27
TraesCS4A01G340600.1	Wheat	plastid	71.04	70.27
GSMUA_Achr11P...	Banana	mitochondrion	56.83	67.53
Os03t0844900-01	Rice	plasma membrane	60.38	65.19
TraesCS5B01G534400.1	Wheat	plastid	69.67	59.3
HORVU5Hr1G120650.5	Barley	nucleus	70.49	52.98
VIT_05s0062g00830.t01	Wine grape	plastid	54.92	51.54
KRG97374	Soybean	nucleus	52.73	51.06
PGSC0003DMT400042869	Potato	plastid	53.55	50.91
KRH31544	Soybean	plastid	53.28	50.52
Solyc09g097910.2.1	Tomato	nucleus	53.01	49.74
CDX85123	Canola	plastid	49.45	48.4
CDX77487	Canola	plastid	50.0	48.28
Bra014973.1-P	Field mustard	plastid	50.27	48.17
AT3G23700.1	Thale cress	plastid	50.27	46.94
EES04357	Sorghum	nucleus, plastid	24.04	11.08

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	EntrezGene:8060886	UniProt:C5WSY9	EnsemblPlants:EER90528	ProteinID:EER90528
ProteinID:EER90528.1	GO:GO:0000462	GO:GO:0000466	GO:GO:0000481	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016043	GO:GO:0032040	GO:GO:0032508
GO:GO:0034337	InterPro:IPR003029	InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270
InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	EnsemblPlantsGene:SORBI_3001G015200	SUPFAM:SSF50249	unigene:Sbi.2847
UniParc:UPI0001A82544	RefSeq:XP_002463530.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1348406..1352435

Molecular Weight (calculated)

40093.8 Da

IEP (calculated)

4.718

GRAVY (calculated)

-0.128

Length

366 amino acids

Sequence
(BLAST)

001: MLVASLRPGP SLAAFPASAR RSPVPFLPFP ARLHHRSLLL SATAEGTGAP AGQGDASDAP VDEARLPQFA VDWEAARTYK DQGNILTLPV LRANSGGLIV
101: RFNSLQGFVP NPLLSPAHWC EDPKRPIQDI TKDLVGTSIS VKVAEVNEEE RKLVFSEKDA SWSTYSSLIK IGDIYDGIVG SVFPYGAFVH LRFPDGLYHL
201: TGLVHISEVS WDLVQDVQDF LNEGDAVKVI VVNIDTAKSR IALSIRQLEE DPLLETLDKV IPLEADQSPD RMMSPSEVEL LPGLDGICNE LLQEDGITDV
301: QFGRQASEKR VVSQDLELWL SNAPAKDNKF TLLARAGRQV QEVYLTTSLD QEGIKKAVQR VLGRVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.