Factsheet for Zm00001d034828_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90528	Sorghum	plastid	89.6	91.8
TraesCS4A01G340600.1	Wheat	plastid	69.33	70.27
TraesCS5D01G532100.1	Wheat	plastid	69.33	70.27
GSMUA_Achr11P...	Banana	mitochondrion	55.47	67.53
Os03t0844900-01	Rice	plasma membrane	59.73	66.08
TraesCS5B01G534400.1	Wheat	plastid	67.73	59.07
HORVU5Hr1G120650.5	Barley	nucleus	69.07	53.18
VIT_05s0062g00830.t01	Wine grape	plastid	52.27	50.26
KRH31544	Soybean	plastid	51.2	49.74
KRG97374	Soybean	nucleus	49.6	49.21
PGSC0003DMT400042869	Potato	plastid	50.4	49.09
Solyc09g097910.2.1	Tomato	nucleus	50.4	48.46
CDX85123	Canola	plastid	47.73	47.86
CDX77487	Canola	plastid	48.0	47.49
Bra014973.1-P	Field mustard	plastid	48.27	47.38
AT3G23700.1	Thale cress	plastid	48.0	45.92
Zm00001d014991_P004	Maize	plastid	21.87	10.37

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.2	UniProt:A0A1D6LBR7	GO:GO:0000481	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0016043	GO:GO:0032508	GO:GO:0034337	InterPro:IPR003029
InterPro:NA-bd_OB-fold	ProteinID:ONM11541.1	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270	InterPro:S1_dom
InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249	UniParc:UPI000844F04C	EnsemblPlantsGene:Zm00001d034828	EnsemblPlants:Zm00001d034828_P002
EnsemblPlants:Zm00001d034828_T002	SEG:seg	:	:	:	:

Description

Nucleic acid-binding proteins superfamily

Coordinates

chr1:-:303240120..303243318

Molecular Weight (calculated)

41074.2 Da

IEP (calculated)

5.693

GRAVY (calculated)

-0.119

Length

375 amino acids

Sequence
(BLAST)

001: MLAASLRPGP SLAAFPGTAQ RSPVPFLPFP ARLHHRPVLL SATAEGTGAP AGQGDASAAP LDEVRLPQFA ADWESARACK DQGRIFSLPV LRANSGGLIV
101: RFNSLQGFVP NPLLSPAHWC KAKLADPKRP IQDVTKDLVG TSISVKVAEV NEEEKKLVFS EKDASWSTYS SRIKIGDIYD GIVGSVFHYG AFVHLRFPDA
201: TNSIGLYHLT GLVHISEVSW DLVQDVKDFL NEGDAVKVIV VNIDMTKSRI ALSIRQLEED PLLETLDKVI PLEADQSPNR MMSPSEVELL PGLDGICNEL
301: LQEDGITDVQ FGRQALEKRV VSQDLELWIS NVQAKDNRFT LLARAGRQVQ EVYLTTSLDQ EGIKKAVQRV LGRVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.