CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77487	Canola	plastid	95.19	93.93
AT3G23700.1	Thale cress	plastid	85.83	81.89
GSMUA_Achr11P...	Banana	mitochondrion	53.48	64.94
KRG97374	Soybean	nucleus	60.16	59.52
KRH31544	Soybean	plastid	60.16	58.29
VIT_05s0062g00830.t01	Wine grape	plastid	60.7	58.21
PGSC0003DMT400042869	Potato	plastid	59.63	57.92
Solyc09g097910.2.1	Tomato	nucleus	59.63	57.18
EER90528	Sorghum	plastid	48.4	49.45
TraesCS4A01G340600.1	Wheat	plastid	47.59	48.11
TraesCS5D01G532100.1	Wheat	plastid	47.59	48.11
Zm00001d034828_P002	Maize	plastid	47.86	47.73
TraesCS5B01G534400.1	Wheat	plastid	46.79	40.7
Os03t0844900-01	Rice	plasma membrane	35.56	39.23
HORVU5Hr1G120650.5	Barley	nucleus	46.26	35.52
CDY31279	Canola	cytosol	8.29	17.32
CDX98043	Canola	plastid	23.26	11.97
CDY60261	Canola	plastid	22.99	11.88

Protein Annotations

EnsemblPlants:CDX85123	EnsemblPlantsGene:GSBRNA2T00142648001	Gene3D:2.40.50.140	GO:A0A078DCV4	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR003029	InterPro:NA-bd_OB-fold	InterPro:S1_dom	InterPro:S1_domain	PANTHER:PTHR23270
PFAM:PF00575	PFscan:PS50126	ProteinID:CDX85123	ProteinID:CDX85123.1	SEG:seg	SMART:SM00316
SUPFAM:SSF50249	UniParc:UPI0004EEA669	MapMan:35.1	:	:	:

Description

BnaC07g07830D

Coordinates

chrLK031840:-:894189..896771

Molecular Weight (calculated)

41103.9 Da

IEP (calculated)

5.284

GRAVY (calculated)

-0.219

Length

374 amino acids

Sequence
(BLAST)

001: MAVFGGANLG SVSFSSHLLN QHSCFLSCPL KLLPSSSNRT SLLCVVKSFS GSVTAGTDTS SDQSLLRDDA GPPRMSTDWK LAKAYCKSGD TFEGEVEGFN
101: GGGLLIRFHS LVGFLPYPQL TPSRSCKEPQ KSIHEIAKTL VGSILPLKVV QADEENKKLI LSEKLALWPK YSQNVNVGDV FTGRVGSVED YGAFIHLRFD
201: DGLYHLTGLV HVSEVSWDYV QDVRDVLRDG DEVRVIVTNI DKEKSRITLS IKQLEDDPLL ETLDKVILKD SSSGSPSLSS NNGDTIDPLP GLETILEELL
301: QEDGIEAVRI NRQGFEKRVV SQDLQLWLSN TPPSEGKFVL LARAGRQVQE IHLTTSLDQQ GIKNALQRVL ERVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.