Factsheet for GSMUA_Achr11P11000_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90528	Sorghum	plastid	67.53	56.83
VIT_05s0062g00830.t01	Wine grape	plastid	71.1	56.15
Zm00001d034828_P002	Maize	plastid	67.53	55.47
TraesCS4A01G340600.1	Wheat	plastid	66.56	55.41
TraesCS5D01G532100.1	Wheat	plastid	66.23	55.14
KRG97374	Soybean	nucleus	66.23	53.97
PGSC0003DMT400042869	Potato	plastid	66.88	53.51
CDX85123	Canola	plastid	64.94	53.48
Bra014973.1-P	Field mustard	plastid	66.23	53.4
CDX77487	Canola	plastid	65.58	53.3
Solyc09g097910.2.1	Tomato	nucleus	66.88	52.82
KRH31544	Soybean	plastid	65.58	52.33
AT3G23700.1	Thale cress	plastid	64.94	51.02
TraesCS5B01G534400.1	Wheat	plastid	65.91	47.21
Os03t0844900-01	Rice	plasma membrane	48.38	43.95
HORVU5Hr1G120650.5	Barley	nucleus	66.23	41.89
GSMUA_Achr1P17520_001	Banana	nucleus, plastid	25.97	11.13

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	GO:GO:0000481	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0016043	GO:GO:0032508	GO:GO:0034337	EnsemblPlantsGene:GSMUA_Achr11G11000_001	EnsemblPlants:GSMUA_Achr11P11000_001
EnsemblPlants:GSMUA_Achr11T11000_001	InterPro:IPR003029	UniProt:M0RR80	InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126
PANTHER:PTHR23270	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249	UniParc:UPI000295F946

Description

S1 RNA binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G11000_001]

Coordinates

chr11:+:8719600..8728703

Molecular Weight (calculated)

34566.2 Da

IEP (calculated)

5.000

GRAVY (calculated)

-0.271

Length

308 amino acids

Sequence
(BLAST)

001: MHVSTIFLRS ADWRAARAYK DSGVLFDGKI EAFNNGGLLI RFYSLLGFLP YPLLSPSHSC KDPSRTIQDI AKDLVGSSIS VKIIEANEEE KKLIYSEKDA
101: AWSKYSSQIN VGNVFDGRVG SLEDYGAFVH LRFPDGYYHL TGLVHVTEVS WDLVQDVRDF LHEGDEVKVK IIQIDKEKSR INLSIKQLED DPLMETLDKV
201: IPQEGQLVSD SIDTSSSMNI EPLPGLESIC KELLQEDGIS DVQLGRQGLE KRVVSQDLQL WLSNVPAKDK QFTLLARAGR QVQEVYLTTT LDQDGIKKAV
301: QRVLGRVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.