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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 7
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH31544 Soybean plastid 88.62 86.79
GSMUA_Achr11P... Banana mitochondrion 53.97 66.23
VIT_05s0062g00830.t01 Wine grape plastid 66.67 64.62
PGSC0003DMT400042869 Potato plastid 62.43 61.3
CDX85123 Canola plastid 59.52 60.16
Solyc09g097910.2.1 Tomato nucleus 61.38 59.49
CDX77487 Canola plastid 58.73 58.58
Bra014973.1-P Field mustard plastid 58.99 58.38
AT3G23700.1 Thale cress plastid 58.2 56.12
EER90528 Sorghum plastid 51.06 52.73
TraesCS5D01G532100.1 Wheat plastid 49.47 50.54
TraesCS4A01G340600.1 Wheat plastid 48.94 50.0
Zm00001d034828_P002 Maize plastid 49.21 49.6
TraesCS5B01G534400.1 Wheat plastid 48.68 42.79
Os03t0844900-01 Rice plasma membrane 37.3 41.59
HORVU5Hr1G120650.5 Barley nucleus 47.88 37.17
KRH41145 Soybean nucleus, plastid 22.22 11.63
KRH55977 Soybean cytosol, nucleus 4.76 11.54
KRH59845 Soybean plastid 20.9 10.79
Protein Annotations
EntrezGene:100798303Gene3D:2.40.50.140MapMan:35.1UniProt:A0A0R0F511EMBL:ACUP02010794EnsemblPlantsGene:GLYMA_18G004100
GO:GO:0000462GO:GO:0000466GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0032040InterPro:IPR003029EnsemblPlants:KRG97374
ProteinID:KRG97374ProteinID:KRG97374.1InterPro:NA-bd_OB-foldPFAM:PF00575PFscan:PS50126PANTHER:PTHR23270
InterPro:S1_domInterPro:S1_domainSMART:SM00316SUPFAM:SSF50249UniParc:UPI000233EFC8SEG:seg
Description
hypothetical protein
Coordinates
chr18:+:331235..335170
Molecular Weight (calculated)
42209.1 Da
IEP (calculated)
5.450
GRAVY (calculated)
-0.329
Length
378 amino acids
Sequence
(BLAST)
001: MPIFSATLGS FTSISSSFLS QSHLSPFVKT PCQWQHHYHT AKVLVSASGN TQIDQNPDSG LLQRPTPPDP LDDARQARRS SDWKAAKTYQ DSKVIYNGRV
101: EGFNSGGLLV RFYSVMGFLP FPQLSPVHAS KEPEKSIQEI AQGLIGSIMS VKVILADEDN KKLIFSEKEA AWSKYSKQVN VGDIFEVRVG YVEDYGAFVH
201: LRFPDGLYHL TGLIHVSEVS WDLIQDVRDI LKVGDEVRAK VVGIDWGKSR INLSIRQLEE DPLLETLDKV IPQDGSADPD SMSGGDSGSI EPLPGLETIL
301: EELLQEDGIY DVRISRQGFE KRVVSQDLQL WLSNAPPTNQ RFTLLARAGR QVQEIHLTTS LDQEGIRRAL QRVLERVP
Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)
001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP
Arabidopsis Description
At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.