Factsheet for Solyc09g097910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042869	Potato	plastid	94.62	95.84
GSMUA_Achr11P...	Banana	mitochondrion	52.82	66.88
VIT_05s0062g00830.t01	Wine grape	plastid	64.1	64.1
KRG97374	Soybean	nucleus	59.49	61.38
KRH31544	Soybean	plastid	59.74	60.36
CDX77487	Canola	plastid	57.95	59.63
CDX85123	Canola	plastid	57.18	59.63
Bra014973.1-P	Field mustard	plastid	57.95	59.16
AT3G23700.1	Thale cress	plastid	58.21	57.91
EER90528	Sorghum	plastid	49.74	53.01
Zm00001d034828_P002	Maize	plastid	48.46	50.4
TraesCS4A01G340600.1	Wheat	plastid	47.69	50.27
TraesCS5D01G532100.1	Wheat	plastid	46.41	48.92
TraesCS5B01G534400.1	Wheat	plastid	46.67	42.33
Os03t0844900-01	Rice	plasma membrane	36.67	42.18
HORVU5Hr1G120650.5	Barley	nucleus	46.15	36.96
Solyc08g007950.2.1	Tomato	plastid	23.08	10.19

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	GO:GO:0000462	GO:GO:0000466	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040
InterPro:IPR003029	UniProt:K4CWW3	InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270
InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249	EnsemblPlantsGene:Solyc09g097910.2	EnsemblPlants:Solyc09g097910.2.1
UniParc:UPI000276BF7A	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:71897900..71901993

Molecular Weight (calculated)

43294.7 Da

IEP (calculated)

5.868

GRAVY (calculated)

-0.207

Length

390 amino acids

Sequence
(BLAST)

001: MSVAAMGIVS GGIGYLSQLF TSDIAASTHQ FCCFSVNSSP LHMNFSRSGC LVKRGSLLSP RVSVSTTGNA KIDGVDDQLS LSPDEIKPAR KSADWKAART
101: YSERGLIFEG KVEGFNGGGL LIRFYSLVGF LPFPQMSPYH SCKEPQKTIQ EIARDLTGSV LSVKVIQADE DRRRLIFSEK EASWLKFSNK INVGDTYQAK
201: VGSVEDYGAF VHLRFPDGSY HLTGLVHVSE VSWDLVHDVR DILTEGDDVR VKIINIDREK SRITLSIKQL EEDPLLETLD KVIHKDASVH KNSLDSNGSL
301: VIEPLPGLET IIEELMQEDG IYDILISRQG FEKRVVSQDL QLWLSNAPAT GDQFTLLARA GRQVQEIQLT TSLDQEGIKR ALQRVLERVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.