Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0025g03970.t01 | Wine grape | plastid | 47.45 | 54.2 |
| CDX98043 | Canola | plastid | 42.7 | 51.86 |
| Bra019788.1-P | Field mustard | plastid | 42.7 | 51.64 |
| CDY60261 | Canola | plastid | 42.24 | 51.52 |
| AT1G12800.1 | Thale cress | plastid | 43.6 | 50.2 |
| KRH41145 | Soybean | nucleus, plastid | 41.0 | 50.14 |
| CDY31279 | Canola | cytosol | 9.63 | 47.49 |
| GSMUA_Achr1P17520_001 | Banana | nucleus, plastid | 37.94 | 46.59 |
| KRH59845 | Soybean | plastid | 38.17 | 46.04 |
| KRH55977 | Soybean | cytosol, nucleus | 7.93 | 44.87 |
| EES04357 | Sorghum | nucleus, plastid | 33.75 | 37.53 |
| TraesCS6A01G041000.1 | Wheat | nucleus, plastid | 31.71 | 37.14 |
| TraesCS6B01G056100.1 | Wheat | nucleus, plastid | 31.6 | 37.0 |
| TraesCS6D01G047400.1 | Wheat | nucleus, plastid | 31.48 | 36.87 |
| Zm00001d014991_P004 | Maize | plastid | 32.05 | 35.78 |
| Os02t0115600-01 | Rice | plastid | 32.28 | 35.67 |
| HORVU6Hr1G008590.12 | Barley | nucleus | 28.54 | 32.98 |
| Solyc09g097910.2.1 | Tomato | nucleus | 10.19 | 23.08 |
Protein Annotations
| Gene3D:2.40.50.140 | MapMan:35.2 | GO:GO:0000462 | GO:GO:0000466 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0019843 | GO:GO:0032040 | GO:GO:0034337 |
| GO:GO:1901259 | InterPro:IPR003029 | UniProt:K4CIT0 | InterPro:NA-bd_OB-fold | PFAM:PF00575 | PFscan:PS50126 |
| PANTHER:PTHR23270 | PANTHER:PTHR23270:SF7 | InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SUPFAM:SSF50249 |
| EnsemblPlantsGene:Solyc08g007950.2 | EnsemblPlants:Solyc08g007950.2.1 | UniParc:UPI000276CA54 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr8:+:2447788..2457565
Molecular Weight (calculated)
98236.1 Da
IEP (calculated)
6.228
GRAVY (calculated)
-0.583
Length
883 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNLSLDKTS TPNPLLSISS LHHSRISKSL CLPRKVLVFA DKNDNSASIT SGFLSKTHFS YKKVTVFADK DDNSSPVASG VLSRTHFSSK KVAVFASKDD
101: NFSSITSGVL SRTVFSSRKT KKFVVFASKD DRNSNKLDQW DQMELKFGRL IGEDPKLTLA KIISRKTNPE TSYLEIEESF EQKKGKTSGE TVEVPFDASK
201: QKKSLNSSNG LNLVRPVPKK GVKFEVDEKQ PKTEGYKQSQ PISRPEVSRK SSVPNVILRK PSLYSEEDES SKFKIKPNLT LKMGRELKPE KFSDVTLLKK
301: PEPMRISSDD SEKNGQSSDK SSDATLLKKP EPMRISSDDS EKNGQSSDVL PVSSDDSEDA SLTEVYASSS EPKNSLLLNK PEPSNLNLKI DPNKESSEVQ
401: HPSISDESTF DAANSSSELI SMAESKLRQP LQSNRSNPLE KQGFGTGFQQ TDTQPAERSS DSNTPAETGP MESLDAALLG KPKRLDRPKK EASRVSQEDM
501: RPVKSEGYGN ASEIENFLAK SSIKEHEDND WVRAEELVKS GGREDVELVS CSTRGFVVSF GSLIGFLPYR NLAARWKFLA FESWLRQKGL DPSQYKQGLG
601: IIGGYDGFGK AASPEAGVDP QIAKNADEEI SPDMKLEDLL RIYDQEKLQF LSSFVGLRIR VSVVLADRYS RRLIFSLKAK EKEELVEKKK SLMAKLQVGD
701: VVKCCIQKIT YFGIFVEVEG VLALIHQTEV SWDATLDPAS YFKIGQIVEA KVHQLDFSLE RIFLSLKEIT PDPMMEALEA VVGDPDNLNG ELQASELDTE
801: WPDVESLIKE LKQFEGISSV SKGRYFLSPG LAPTFQVYMA SMFENQYKLL ARSGNRVQEV IVETSLSKEE MKSAIQSCTN KVE
101: NFSSITSGVL SRTVFSSRKT KKFVVFASKD DRNSNKLDQW DQMELKFGRL IGEDPKLTLA KIISRKTNPE TSYLEIEESF EQKKGKTSGE TVEVPFDASK
201: QKKSLNSSNG LNLVRPVPKK GVKFEVDEKQ PKTEGYKQSQ PISRPEVSRK SSVPNVILRK PSLYSEEDES SKFKIKPNLT LKMGRELKPE KFSDVTLLKK
301: PEPMRISSDD SEKNGQSSDK SSDATLLKKP EPMRISSDDS EKNGQSSDVL PVSSDDSEDA SLTEVYASSS EPKNSLLLNK PEPSNLNLKI DPNKESSEVQ
401: HPSISDESTF DAANSSSELI SMAESKLRQP LQSNRSNPLE KQGFGTGFQQ TDTQPAERSS DSNTPAETGP MESLDAALLG KPKRLDRPKK EASRVSQEDM
501: RPVKSEGYGN ASEIENFLAK SSIKEHEDND WVRAEELVKS GGREDVELVS CSTRGFVVSF GSLIGFLPYR NLAARWKFLA FESWLRQKGL DPSQYKQGLG
601: IIGGYDGFGK AASPEAGVDP QIAKNADEEI SPDMKLEDLL RIYDQEKLQF LSSFVGLRIR VSVVLADRYS RRLIFSLKAK EKEELVEKKK SLMAKLQVGD
701: VVKCCIQKIT YFGIFVEVEG VLALIHQTEV SWDATLDPAS YFKIGQIVEA KVHQLDFSLE RIFLSLKEIT PDPMMEALEA VVGDPDNLNG ELQASELDTE
801: WPDVESLIKE LKQFEGISSV SKGRYFLSPG LAPTFQVYMA SMFENQYKLL ARSGNRVQEV IVETSLSKEE MKSAIQSCTN KVE
001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
Arabidopsis Description
Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.