Factsheet for TraesCS6D01G047400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G041000.1	Wheat	nucleus, plastid	96.15	96.15
TraesCS6B01G056100.1	Wheat	nucleus, plastid	95.89	95.89
HORVU6Hr1G008590.12	Barley	nucleus	85.15	84.03
Os02t0115600-01	Rice	plastid	68.44	64.58
EES04357	Sorghum	nucleus, plastid	65.12	61.84
Zm00001d014991_P004	Maize	plastid	61.94	59.04
GSMUA_Achr1P17520_001	Banana	nucleus, plastid	40.72	42.7
CDY31279	Canola	cytosol	9.42	39.66
KRH41145	Soybean	nucleus, plastid	36.87	38.5
CDX98043	Canola	plastid	36.87	38.24
CDY60261	Canola	plastid	36.6	38.12
Bra019788.1-P	Field mustard	plastid	36.6	37.81
VIT_02s0025g03970.t01	Wine grape	plastid	38.59	37.65
KRH55977	Soybean	cytosol, nucleus	7.69	37.18
AT1G12800.1	Thale cress	plastid	37.0	36.38
KRH59845	Soybean	plastid	34.62	35.66
Solyc08g007950.2.1	Tomato	plastid	36.87	31.48
TraesCS5D01G532100.1	Wheat	plastid	11.14	22.7

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0019843	GO:GO:0034337	GO:GO:1901259	InterPro:IPR003029	InterPro:NA-bd_OB-fold	PFAM:PF00575
PFscan:PS50126	PANTHER:PTHR23270	PANTHER:PTHR23270:SF7	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316
SUPFAM:SSF50249	EnsemblPlantsGene:TraesCS6D01G047400	EnsemblPlants:TraesCS6D01G047400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:21980218..21984857

Molecular Weight (calculated)

83248.0 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.469

Length

754 amino acids

Sequence
(BLAST)

001: MEAFAAAPAA GVFAAARPSV ALRRRGGSRG ASSSYSRTGA GRVRLVRAPP PPRAGGGDGG GDLPALDKWD MMELEFGRFL GEDPKLTLAK ILLKKSDPDA
101: SSLDVEKLVA SKKDTLDVIL KEFMEANKTD KTATTGEAIS APMKEKQPLG VSRPAVSKPK LDEASLAMIR PAGSKPKQAE PPLTFMRPAV SKPKVNKPSL
201: TLMRPMGSKP KVQAKLVQDS WPSKESLAAG TELSEVGSTT TEDIVDVTLR KPVVHQSEDD EQEPELKMKP NVDMKMRKDM DEDLSNISLL QKPEAAKETA
301: NALGSTLVAA GEDTNEREEG LQPSEESLTQ QIDSPALDKP SVTDNNFSMQ AFLQGRPRKD LPVETSPSQV DAEKRSDSDD KKSYVDDGGN VLSSTLEDIT
401: ESDWTRLEHY ASTGERVEVE LINCSAKGFV VSLDSMIGFL PYRNLATKWK FLAFETWLRR KGGDPSLYKQ SMSMEEGPEV SDRSIEPESV SEVAHQDQGT
501: LQSRLKFEEL LRTYDEEKSK FLSSFIGQRL RVSVVLADRN SKRLFFSMRP KESDELIQKR KSLMARLNVG DIVTCTIKRF VYFGIFVEVE GVPALIQQWE
601: VSWDETLDPS VSYRIGQVVD AKVIQLDFNN SRIFLSLKDV KPSPPVGALE AVIGDEASLD GSLEPAQADF EWPEVDSLIE ELKNIEQVKD VYKGRFFRSP
701: GLAPTFQVYM ASLVGQKYKV LARYGNNVQE VMVETSLDKE GLKEAILMCT NRVS

Best Arabidopsis Sequence Match ( AT1G12800.1 )
(BLAST)

001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE

Arabidopsis Description

Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.