CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014991_P004	Maize	plastid	80.86	81.16
Os02t0115600-01	Rice	plastid	68.01	67.58
TraesCS6D01G047400.1	Wheat	nucleus, plastid	61.84	65.12
TraesCS6A01G041000.1	Wheat	nucleus, plastid	61.59	64.85
TraesCS6B01G056100.1	Wheat	nucleus, plastid	61.34	64.59
HORVU6Hr1G008590.12	Barley	nucleus	56.05	58.25
GSMUA_Achr1P17520_001	Banana	nucleus, plastid	40.43	44.65
CDY31279	Canola	cytosol	9.32	41.34
CDY60261	Canola	plastid	37.03	40.61
CDX98043	Canola	plastid	36.78	40.17
Bra019788.1-P	Field mustard	plastid	36.52	39.73
VIT_02s0025g03970.t01	Wine grape	plastid	38.41	39.46
KRH41145	Soybean	nucleus, plastid	35.77	39.34
KRH55977	Soybean	cytosol, nucleus	7.68	39.1
AT1G12800.1	Thale cress	plastid	36.65	37.94
KRH59845	Soybean	plastid	33.75	36.61
Solyc08g007950.2.1	Tomato	plastid	37.53	33.75
EER90528	Sorghum	plastid	11.08	24.04

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.2	UniProt:C5XSA3	ncoils:Coil	EnsemblPlants:EES04357	ProteinID:EES04357
ProteinID:EES04357.2	GO:GO:0000462	GO:GO:0000466	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0019843	GO:GO:0032040	GO:GO:0034337	GO:GO:1901259
InterPro:IPR003029	InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270	PANTHER:PTHR23270:SF7
InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	EnsemblPlantsGene:SORBI_3004G011300	SUPFAM:SSF50249	UniParc:UPI0003C6D5D5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:937419..943525

Molecular Weight (calculated)

87703.4 Da

IEP (calculated)

4.777

GRAVY (calculated)

-0.545

Length

794 amino acids

Sequence
(BLAST)

001: MEAYAGAAPA AGVFAGYGTA ATRSFTLRRR RGSPRSSAGR VRLVRAPPPR AAGDSGDLPP LDKWDIMELD FGRFLGEDPK LTLAKILLKK SDPDASSLDV
101: EKLIATKRDK LDDILRECME ANKKDQGFNT SESGSTLNTT RPTTSKLTEG KSSLNISRPV MGKPIQGGPP LTLLRPAGSK PKQDEPSLVQ PRPVGSKANE
201: DTPSLILSRP IGSKPNVRGI PIQDSWPSKE SLAAATEFSE VGSISRTSEV DATLRKPTVY QSEDDDLKSK LKIKPNINLK MRKDMNEDLT NISLLQKPDV
301: AKDTSNPEQD NASASPATVS ATEDNSELEP ESNGLDEKLV TENVYESSGL DDDSTAGLQP SGQTFIEETS TSAGPVDNQS ATGNNFSMQA FLQGKPKREN
401: ESTEIWPSEV DEKMNSTDNK NYVDDGGNVL PSKLEDITES DWTRLEHYAS TGEKVEVELI NCSAKGFVVS LDSLIGFLPY RNLATKWKFL AFETWLRRKG
501: GDPSLYKQSL GLEDSFEVNE RNIEPESSSV SKIAGEDQES QSSKPKFEDL IRAYNQEKSK FLSSFIGQRL RVSVVLADRN SKRIFFSMKP KESEEFIQKK
601: RNLMARLNVG DIVQCAIKRF VYFGIFVEVE GVPALIQQWE VSWDDTLDPA VSYKIGQVVD AKVIQLDYNN SRIFLSLKDV KPNPSLGALE AVIGEDLSLG
701: EALEPVQSDF EWPEVDALME ELRKIEGVRD VYKGRFFQSP GLAPTFQVYM APVVGPKYKL LARYGNNVQE VMVETTLGKE ELKEAILMCT NRVS

Best Arabidopsis Sequence Match ( AT1G12800.1 )
(BLAST)

001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE

Arabidopsis Description

Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.