Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G056100.1 | Wheat | nucleus, plastid | 84.56 | 85.68 |
| TraesCS6D01G047400.1 | Wheat | nucleus, plastid | 84.03 | 85.15 |
| TraesCS6A01G041000.1 | Wheat | nucleus, plastid | 84.03 | 85.15 |
| Os02t0115600-01 | Rice | plastid | 62.04 | 59.32 |
| EES04357 | Sorghum | nucleus, plastid | 58.25 | 56.05 |
| Zm00001d014991_P004 | Maize | plastid | 56.68 | 54.74 |
| CDY31279 | Canola | cytosol | 9.29 | 39.66 |
| GSMUA_Achr1P17520_001 | Banana | nucleus, plastid | 36.13 | 38.39 |
| KRH55977 | Soybean | cytosol, nucleus | 7.46 | 36.54 |
| KRH41145 | Soybean | nucleus, plastid | 33.77 | 35.73 |
| CDY60261 | Canola | plastid | 33.64 | 35.5 |
| CDX98043 | Canola | plastid | 33.64 | 35.35 |
| Bra019788.1-P | Field mustard | plastid | 33.38 | 34.93 |
| VIT_02s0025g03970.t01 | Wine grape | plastid | 34.82 | 34.41 |
| AT1G12800.1 | Thale cress | plastid | 33.77 | 33.64 |
| KRH59845 | Soybean | plastid | 31.28 | 32.65 |
| Solyc08g007950.2.1 | Tomato | plastid | 32.98 | 28.54 |
| HORVU5Hr1G120650.5 | Barley | nucleus | 11.39 | 17.86 |
Protein Annotations
| Gene3D:2.40.50.140 | MapMan:35.2 | UniProt:A0A287T8J6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0019843 | GO:GO:0034337 | GO:GO:1901259 | EnsemblPlantsGene:HORVU6Hr1G008590 | EnsemblPlants:HORVU6Hr1G008590.12 |
| InterPro:IPR003029 | InterPro:NA-bd_OB-fold | PFAM:PF00575 | PFscan:PS50126 | PANTHER:PTHR23270 | PANTHER:PTHR23270:SF7 |
| InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SUPFAM:SSF50249 | UniParc:UPI000B46A6BB | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:15689807..15694488
Molecular Weight (calculated)
85201.4 Da
IEP (calculated)
5.201
GRAVY (calculated)
-0.515
Length
764 amino acids
Sequence
(BLAST)
(BLAST)
001: AGRVRLVRAR GGDGGGDLPA LDKWDMMELE FGRFLGEDPK LTLAKILLKK SDPDASSLDV EKLVASKKDT LDVILKEFME ANKQDKTATA GEAISAPMKD
101: KQPLGVSRPA LSKPKLDEAS LAMIRPAGSK PKQVDPPLTF VRPAAIKPKV NKPSLTLMRP MGSKPKVQAK LVQDSWPSKE SLAAGTETSE VGSTTTEDIV
201: DVTLRKPVVH QSEDDEQEPE LKMKPNLDLK MRKDMDEDLS NIFLLQKPEA AKEMANALGS TLVAAGEDTN EREEGLQPSE ESLTQQIDSP ALDNPSVTDN
301: NFSMQAFLQG RPRKDLPVET SPSQVDAEKK SDSDDKKGYV DDGGNVLSST LEDITESDWT RLEHYASTGE RVEVELINCS AKGFVVSLDS MIGFLPYRNL
401: ATKWKFLAFE TWLRRKGGDP SLYKQSMSME EGSEVNDRSI EPESVSEVAH QDQGTLQSRL KFEELLRTYD EEKSKFLSSF IGQRLRVSVV LADRNSKRLF
501: FSMRPKESDE LIQKRKSLMA RLNVGDIVTC TIKRFVYFGI FVEVEGVPAL IQQWEVSWDE TLDPSVSYRI GQVVDAKVIQ LDFNNSRIFL SLKDVKPSPP
601: VGALEAVIGD EASLDGSLEP AQADFEWPEV DSLIEELKNI EQVKDVYKGR FFRSPGLAPT FQGIYGIFGW PKVQGPRAVW EQCARGDGGD VTRQRRAERG
701: NYDVHKQGEL IMTVFMLRLH AANFDGIILR FESLCSYSTS PGRKRPSGRR PHRRNHIVPI STTL
101: KQPLGVSRPA LSKPKLDEAS LAMIRPAGSK PKQVDPPLTF VRPAAIKPKV NKPSLTLMRP MGSKPKVQAK LVQDSWPSKE SLAAGTETSE VGSTTTEDIV
201: DVTLRKPVVH QSEDDEQEPE LKMKPNLDLK MRKDMDEDLS NIFLLQKPEA AKEMANALGS TLVAAGEDTN EREEGLQPSE ESLTQQIDSP ALDNPSVTDN
301: NFSMQAFLQG RPRKDLPVET SPSQVDAEKK SDSDDKKGYV DDGGNVLSST LEDITESDWT RLEHYASTGE RVEVELINCS AKGFVVSLDS MIGFLPYRNL
401: ATKWKFLAFE TWLRRKGGDP SLYKQSMSME EGSEVNDRSI EPESVSEVAH QDQGTLQSRL KFEELLRTYD EEKSKFLSSF IGQRLRVSVV LADRNSKRLF
501: FSMRPKESDE LIQKRKSLMA RLNVGDIVTC TIKRFVYFGI FVEVEGVPAL IQQWEVSWDE TLDPSVSYRI GQVVDAKVIQ LDFNNSRIFL SLKDVKPSPP
601: VGALEAVIGD EASLDGSLEP AQADFEWPEV DSLIEELKNI EQVKDVYKGR FFRSPGLAPT FQGIYGIFGW PKVQGPRAVW EQCARGDGGD VTRQRRAERG
701: NYDVHKQGEL IMTVFMLRLH AANFDGIILR FESLCSYSTS PGRKRPSGRR PHRRNHIVPI STTL
001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
Arabidopsis Description
Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.