Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 7
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98043 | Canola | plastid | 96.85 | 97.25 |
| CDY60261 | Canola | plastid | 89.86 | 90.61 |
| AT1G12800.1 | Thale cress | plastid | 75.75 | 72.1 |
| VIT_02s0025g03970.t01 | Wine grape | plastid | 52.33 | 49.42 |
| KRH41145 | Soybean | nucleus, plastid | 48.08 | 48.62 |
| GSMUA_Achr1P17520_001 | Banana | nucleus, plastid | 45.62 | 46.31 |
| KRH59845 | Soybean | plastid | 45.75 | 45.63 |
| Solyc08g007950.2.1 | Tomato | plastid | 51.64 | 42.7 |
| Zm00001d014991_P004 | Maize | plastid | 40.55 | 37.42 |
| TraesCS6A01G041000.1 | Wheat | nucleus, plastid | 38.49 | 37.27 |
| TraesCS6B01G056100.1 | Wheat | nucleus, plastid | 38.08 | 36.87 |
| TraesCS6D01G047400.1 | Wheat | nucleus, plastid | 37.81 | 36.6 |
| EES04357 | Sorghum | nucleus, plastid | 39.73 | 36.52 |
| Os02t0115600-01 | Rice | plastid | 39.86 | 36.42 |
| KRH55977 | Soybean | cytosol, nucleus | 7.26 | 33.97 |
| HORVU6Hr1G008590.12 | Barley | nucleus | 34.93 | 33.38 |
| Bra014973.1-P | Field mustard | plastid | 12.19 | 23.3 |
Protein Annotations
| Gene3D:2.40.50.140 | MapMan:35.2 | EnsemblPlantsGene:Bra019788 | EnsemblPlants:Bra019788.1 | EnsemblPlants:Bra019788.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0019843 | GO:GO:0034337 | GO:GO:1901259 | InterPro:IPR003029 |
| UniProt:M4DTE5 | InterPro:NA-bd_OB-fold | PFAM:PF00575 | PFscan:PS50126 | PANTHER:PTHR23270 | PANTHER:PTHR23270:SF7 |
| InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SUPFAM:SSF50249 | UniParc:UPI000253EC73 | SEG:seg |
Description
AT1G12800 (E=4e-215) | S1 RNA-binding domain-containing protein
Coordinates
chrA06:+:4401527..4404733
Molecular Weight (calculated)
81244.8 Da
IEP (calculated)
4.840
GRAVY (calculated)
-0.445
Length
730 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVIALSSSA SAAVSIAGSF PLFTSSVGVR RNVQAKHKRV VVSASKREEP KLSEWDQMEL KFGRLLGEDP KLTLAKIVAR KVNPEASFVE VEKSFYKNKG
101: KLPDIESIPL DWSKEDTKTK KKPTSLDGLN LVKPVPRDGV KFEASDKPVV KRPNFSLKKP LDAAAAPPVA ATPPKRTLPN VILRKPSSYY VSNDEEDESK
201: LRLKRNLTLK MKNDRENERF SDMTLLRKPE PVSVNAEEDK VLSDGLTMEE GEQEDVVYSE YTLLEKPEAR PEPENVEEEA VEVPEIEDTS VPTEMQLESD
301: TSSDSSEEET INSDPVGITP VSQTTVEASL QGKPQRLDPS SAEPSVSNRG QPVTLNQEGS QVSIELKGPP TRSSLEESDW IKAESLVKTE LRADVELISS
401: STRGFAVSYG SLIGFLPYRN LAAKWKFLAF ESWLRRKGVD PSLYRQNLGV IGGQDVKAPS PDASLAASEV GNAVNGEVSS DMKLEDLLMV YDREKQKFLS
501: SFVGQKIKVN VVMANRNSRK LIFSMRPREN EEEVEKKRNL MAKLRVGDVV KCCIKKITYF GIFCELEGVP ALIHQSEVSW DATLDPASYF KIGQIVEAKV
601: HQLDFALERI FLSLKEITPD PLTEALESVV GDNDQLGKLQ AAELDAEWPD VESLIKEMEM VEGIQSVSKG RFFLSPGLAP TFQVYMAPMF ENQYKLLARA
701: GNRVQELIVE ASLSKEEMKT TIMSCTNRVE
101: KLPDIESIPL DWSKEDTKTK KKPTSLDGLN LVKPVPRDGV KFEASDKPVV KRPNFSLKKP LDAAAAPPVA ATPPKRTLPN VILRKPSSYY VSNDEEDESK
201: LRLKRNLTLK MKNDRENERF SDMTLLRKPE PVSVNAEEDK VLSDGLTMEE GEQEDVVYSE YTLLEKPEAR PEPENVEEEA VEVPEIEDTS VPTEMQLESD
301: TSSDSSEEET INSDPVGITP VSQTTVEASL QGKPQRLDPS SAEPSVSNRG QPVTLNQEGS QVSIELKGPP TRSSLEESDW IKAESLVKTE LRADVELISS
401: STRGFAVSYG SLIGFLPYRN LAAKWKFLAF ESWLRRKGVD PSLYRQNLGV IGGQDVKAPS PDASLAASEV GNAVNGEVSS DMKLEDLLMV YDREKQKFLS
501: SFVGQKIKVN VVMANRNSRK LIFSMRPREN EEEVEKKRNL MAKLRVGDVV KCCIKKITYF GIFCELEGVP ALIHQSEVSW DATLDPASYF KIGQIVEAKV
601: HQLDFALERI FLSLKEITPD PLTEALESVV GDNDQLGKLQ AAELDAEWPD VESLIKEMEM VEGIQSVSKG RFFLSPGLAP TFQVYMAPMF ENQYKLLARA
701: GNRVQELIVE ASLSKEEMKT TIMSCTNRVE
001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
Arabidopsis Description
Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.