CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 7
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59845	Soybean	plastid	79.36	78.28
KRH55977	Soybean	cytosol, nucleus	14.96	69.23
CDY31279	Canola	cytosol	12.33	49.72
VIT_02s0025g03970.t01	Wine grape	plastid	52.63	49.16
CDY60261	Canola	plastid	48.75	48.62
CDX98043	Canola	plastid	48.62	48.28
Bra019788.1-P	Field mustard	plastid	48.62	48.08
AT1G12800.1	Thale cress	plastid	48.34	45.5
GSMUA_Achr1P17520_001	Banana	nucleus, plastid	43.63	43.81
Solyc08g007950.2.1	Tomato	plastid	50.14	41.0
TraesCS6A01G041000.1	Wheat	nucleus, plastid	38.78	37.14
TraesCS6D01G047400.1	Wheat	nucleus, plastid	38.5	36.87
TraesCS6B01G056100.1	Wheat	nucleus, plastid	38.5	36.87
EES04357	Sorghum	nucleus, plastid	39.34	35.77
Os02t0115600-01	Rice	plastid	39.34	35.54
Zm00001d014991_P004	Maize	plastid	38.5	35.15
HORVU6Hr1G008590.12	Barley	nucleus	35.73	33.77
KRH31544	Soybean	plastid	11.91	22.28
KRG97374	Soybean	nucleus	11.63	22.22

Protein Annotations

EntrezGene:100809060	Gene3D:2.40.50.140	MapMan:35.2	EMBL:ACUP02004750	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G012600
GO:GO:0000462	GO:GO:0000466	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	InterPro:IPR003029	UniProt:K7L4D0
EnsemblPlants:KRH41145	ProteinID:KRH41145	ProteinID:KRH41145.1	InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126
PANTHER:PTHR23270	PANTHER:PTHR23270:SF7	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249
UniParc:UPI00023382AB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:982343..988942

Molecular Weight (calculated)

81435.4 Da

IEP (calculated)

5.748

GRAVY (calculated)

-0.558

Length

722 amino acids

Sequence
(BLAST)

001: MGSLPLTSSK PWFSPEKTTR RRAISLNQRV KVFASRSRNE GEKEPPKLDS HDLMELKFGR LLGEDPKLTL AKIMGRKVNP DASYLDIEKA FYKNKGKIVE
101: VEEVPFEGSK GGSSSRKFDD LGLVRPVPAK GMKFKSDNNK PALEIKKPVR ADNKEVGVRK SSVPHVILRK PAALKDDSDG DTLTSRLRMR PNLSLKMQDE
201: QVKARFSDMT LLRKPEAAIQ EPSSSVDDQG NYDGELKMWN GELSDEIGGF TLLERPHKPS GEKEESGERE MLEVNVMIPN DGLEQHEERQ LEFHEESTDL
301: GQLSDDSRVE LSVEAALQAK PKRLDQYVKQ ASKLVGEEGA SLNIGARTNK DDLGKVVDMS DFQESEDADW TRAQDLIKTG DREDVELVSC NTKGFIVSFG
401: SLVGFLPYRN LASKWKFLAF ESWLKQKGLD PSIYKQNSGT ITSFDAEIKN LSPDSPPSLE IDGKVEDRIS PDMKLEDLLR IYDQEKLKFL SSFVGQKIKT
501: NVLVADRKMR KLIFSLRPKE KEELVEKKRN LMAKLQVGDI VKCRVQKIAY FGIFVEVEEV SALIHQSELS WDATLNPASY FQIGQVLEAK VHQINFALER
601: IFLSLKEVMP DPLMNSLEAI VGDHDPLDGR LKAAQTDVEW PEVDSLVEEL QKIEGVQSVS KGRFFRSPGL APTFQVYMAS IFEDQYKLLA RSGNKIQEVI
701: VQTSLDKERM KSAVMTCANR VE

Best Arabidopsis Sequence Match ( AT1G12800.1 )
(BLAST)

001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE

Arabidopsis Description

Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.