Factsheet for Os02t0115600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

plastid: 17189339

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G047400.1	Wheat	nucleus, plastid	64.58	68.44
TraesCS6B01G056100.1	Wheat	nucleus, plastid	64.58	68.44
TraesCS6A01G041000.1	Wheat	nucleus, plastid	64.33	68.17
EES04357	Sorghum	nucleus, plastid	67.58	68.01
Zm00001d014991_P004	Maize	plastid	65.46	66.12
HORVU6Hr1G008590.12	Barley	nucleus	59.32	62.04
GSMUA_Achr1P17520_001	Banana	nucleus, plastid	39.05	43.39
CDY31279	Canola	cytosol	9.26	41.34
CDY60261	Canola	plastid	36.3	40.06
CDX98043	Canola	plastid	36.42	40.03
Bra019788.1-P	Field mustard	plastid	36.42	39.86
KRH41145	Soybean	nucleus, plastid	35.54	39.34
KRH55977	Soybean	cytosol, nucleus	7.63	39.1
VIT_02s0025g03970.t01	Wine grape	plastid	36.42	37.65
AT1G12800.1	Thale cress	plastid	35.29	36.77
KRH59845	Soybean	plastid	32.79	35.79
Solyc08g007950.2.1	Tomato	plastid	35.67	32.28
Os03t0844900-01	Rice	plasma membrane	8.14	19.17

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.2	EntrezGene:4328072	EMBL:AK067366	ProteinID:BAD07710.1	ProteinID:BAD07935.1
ProteinID:BAF07586.1	ProteinID:BAS76645.1	ProteinID:BAS76646.1	ncoils:Coil	ProteinID:EEE56173.1	GO:GO:0000462
GO:GO:0000466	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0019843	GO:GO:0032040	GO:GO:0034337	GO:GO:1901259	InterPro:IPR003029	InterPro:NA-bd_OB-fold
EnsemblPlantsGene:Os02g0115600	EnsemblPlants:Os02t0115600-01	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270	PANTHER:PTHR23270:SF7
UniProt:Q6Z7B3	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249	UniParc:UPI00002367AC
RefSeq:XP_015625394.1	SEG:seg	:	:	:	:

Description

S1, RNA binding domain containing protein. (Os02t0115600-01);Nucleic acid-binding, OB-fold-like domain containing protein. (Os02t0115600-02)

Coordinates

chr2:+:818981..824539

Molecular Weight (calculated)

88257.4 Da

IEP (calculated)

4.741

GRAVY (calculated)

-0.542

Length

799 amino acids

Sequence
(BLAST)

001: MEAFAAAAAA AGVFAGAGAA ARPVLLRRRG APRSGRVRLL RAPPRAGGDR GGDLPPLDEW DRMELEFGRF LGEDPKLTLA KILLKKADPD ASSLDVENLI
101: ANKKAKLDDI LREFMDANRQ EQTSESPEET SKPMVDKNSP SMSRPVQTNA KQDEPALTLL RPAGSKLKQD DPPLTLQRPA GSKPKQDGPS LAPLRPVGSK
201: PKENNTSLTL VRPMGSRPIV RGKPVQDSWP SKGSLAARRE SSDVGSTSRK NNVDVSLRKP TIHQSDDDEL KSKLNLKPNI DLKMRKDMDE DLANISLLQK
301: PELSVDNMNS NQEKSDAGPA SVASGEDNGA VDPETNGLDE RVVIDSINDR ESSVLPDDLS AELQPSEQNF NREGDPSVVD DQSAVSSNFS MQAFLQGKPK
401: MKDLAVETFP SQVDAEKMNA SENNMNYVDD GGNVLSSKLE DITESDWTRL ENYASTGEKV EVELINCSSK GFVVSLDSLI GFLPYRNLAT KWKFLAFETW
501: LRQKGGDPSL FKQSVGIEES FEVNDRNIES VSSSDSELAV QDQGSMPSKE KFEDLLRTYN TEKSKFLSSF IGQRLRVSVV LADRKSKKIF FSMKPKESEE
601: LIQKKKSLMA KLNVGDIVEC TIKRFVYFGI FVEVEGVPAL IQQWEVSWDE TLDPSVSYKI GQVVDAKVIQ LDYNNNRIFL SLKDVKPNPS VGALEAVIGE
701: ELSLGGALEP AEADFEWPEV DALMEEMKNI EEVRDVYKGR FLRSPGLAPT FQVYMAPLVG QKYKLLARYG NNVQEVMVET SLDKEQLKEA VLACTNRVS

Best Arabidopsis Sequence Match ( AT1G12800.1 )
(BLAST)

001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE

Arabidopsis Description

Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.