Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31279 | Canola | cytosol | 11.54 | 46.37 |
| CDY60261 | Canola | plastid | 46.04 | 45.72 |
| VIT_02s0025g03970.t01 | Wine grape | plastid | 49.1 | 45.67 |
| Bra019788.1-P | Field mustard | plastid | 46.31 | 45.62 |
| CDX98043 | Canola | plastid | 46.04 | 45.53 |
| KRH41145 | Soybean | nucleus, plastid | 43.81 | 43.63 |
| AT1G12800.1 | Thale cress | plastid | 46.04 | 43.16 |
| KRH59845 | Soybean | plastid | 41.59 | 40.85 |
| TraesCS6D01G047400.1 | Wheat | nucleus, plastid | 42.7 | 40.72 |
| TraesCS6A01G041000.1 | Wheat | nucleus, plastid | 42.42 | 40.45 |
| EES04357 | Sorghum | nucleus, plastid | 44.65 | 40.43 |
| TraesCS6B01G056100.1 | Wheat | nucleus, plastid | 42.14 | 40.19 |
| KRH55977 | Soybean | cytosol, nucleus | 8.62 | 39.74 |
| Zm00001d014991_P004 | Maize | plastid | 43.53 | 39.57 |
| Os02t0115600-01 | Rice | plastid | 43.39 | 39.05 |
| Solyc08g007950.2.1 | Tomato | plastid | 46.59 | 37.94 |
| HORVU6Hr1G008590.12 | Barley | nucleus | 38.39 | 36.13 |
| GSMUA_Achr11P... | Banana | mitochondrion | 11.13 | 25.97 |
Protein Annotations
| Gene3D:2.40.50.140 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0019843 |
| GO:GO:0034337 | GO:GO:1901259 | EnsemblPlantsGene:GSMUA_Achr1G17520_001 | EnsemblPlants:GSMUA_Achr1P17520_001 | EnsemblPlants:GSMUA_Achr1T17520_001 | InterPro:IPR003029 |
| UniProt:M0S0R0 | InterPro:NA-bd_OB-fold | PFAM:PF00575 | PFscan:PS50126 | PANTHER:PTHR23270 | PANTHER:PTHR23270:SF7 |
| InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SUPFAM:SSF50249 | UniParc:UPI000294FD90 | SEG:seg |
Description
Putative S1 RNA binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G17520_001]
Coordinates
chr1:+:13024448..13036974
Molecular Weight (calculated)
80058.4 Da
IEP (calculated)
6.145
GRAVY (calculated)
-0.497
Length
719 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAARTVCSV IGGGFFLPFP FPPRRRSVGR RPGLLPVFRT SSKDGPELDK WDQMELKFGR LLGEDPKLTL AKIMARKSNP DVSYLEVEKS FRRNKGKLDD
101: YMINVPEDMR VKQPPSVSSK KEDTSNKKNA QNVTVEGQVN LSRPTMNRGI RAMRPPEKPT SIQSQPNQIL GDTEDRSTDP NISLRKPSIT QDDDIEMNSK
201: LKFKPNLVLK MRKNTSENIS NVSLLKKPEV VKVPLGSEQE SVSSGNSSHS SMPLENDVIE GHLDDKDADI SDSSNLDDGV VAGLQPPNQS AAEANVAEAS
301: STRLDNDSAD AISMQAALLG KPQRLDSPLK EMSRPFREEK IALQHDGHVS TSGTEPVISA DQEEIEESDW KRAGHLLHTG EKAEVELISC SSRGFVVSFG
401: SLIGFLPYRN LGAKWKFLAF ESWLRKKGVD PSLYRQNLSI LGSYDARSKD LGLESTSGKE NQNSEVSPTK VKFEDLYEAY DQEKNKFLSS FIGQRLKVSV
501: ILADKNSRKL MFSGRPKEKE EVVEKKRSLM ARLSIGDVVK CSIKKITYFG IFVEVEGVTA LIHQSEVPWD ATLDPTSYFK VGQIVEAKVH QLDYTLERIM
601: LSLKDIMPDP LIEALESVVG DHASLGGRLE ATQSDAEWAD VDSLIQELQK IDGISGVSKG RFFISPGLAP TFQVYMASMF DNKYKLLARY ENMVQEVVVE
701: SSLDKEQMKA AILTCINRV
101: YMINVPEDMR VKQPPSVSSK KEDTSNKKNA QNVTVEGQVN LSRPTMNRGI RAMRPPEKPT SIQSQPNQIL GDTEDRSTDP NISLRKPSIT QDDDIEMNSK
201: LKFKPNLVLK MRKNTSENIS NVSLLKKPEV VKVPLGSEQE SVSSGNSSHS SMPLENDVIE GHLDDKDADI SDSSNLDDGV VAGLQPPNQS AAEANVAEAS
301: STRLDNDSAD AISMQAALLG KPQRLDSPLK EMSRPFREEK IALQHDGHVS TSGTEPVISA DQEEIEESDW KRAGHLLHTG EKAEVELISC SSRGFVVSFG
401: SLIGFLPYRN LGAKWKFLAF ESWLRKKGVD PSLYRQNLSI LGSYDARSKD LGLESTSGKE NQNSEVSPTK VKFEDLYEAY DQEKNKFLSS FIGQRLKVSV
501: ILADKNSRKL MFSGRPKEKE EVVEKKRSLM ARLSIGDVVK CSIKKITYFG IFVEVEGVTA LIHQSEVPWD ATLDPTSYFK VGQIVEAKVH QLDYTLERIM
601: LSLKDIMPDP LIEALESVVG DHASLGGRLE ATQSDAEWAD VDSLIQELQK IDGISGVSKG RFFISPGLAP TFQVYMASMF DNKYKLLARY ENMVQEVVVE
701: SSLDKEQMKA AILTCINRV
001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
Arabidopsis Description
Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.