Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60261 | Canola | plastid | 73.53 | 77.9 |
| CDX98043 | Canola | plastid | 72.75 | 76.75 |
| Bra019788.1-P | Field mustard | plastid | 72.1 | 75.75 |
| VIT_02s0025g03970.t01 | Wine grape | plastid | 51.37 | 50.97 |
| KRH41145 | Soybean | nucleus, plastid | 45.5 | 48.34 |
| GSMUA_Achr1P17520_001 | Banana | nucleus, plastid | 43.16 | 46.04 |
| KRH59845 | Soybean | plastid | 43.16 | 45.22 |
| Solyc08g007950.2.1 | Tomato | plastid | 50.2 | 43.6 |
| TraesCS6A01G041000.1 | Wheat | nucleus, plastid | 36.77 | 37.4 |
| TraesCS6B01G056100.1 | Wheat | nucleus, plastid | 36.64 | 37.27 |
| TraesCS6D01G047400.1 | Wheat | nucleus, plastid | 36.38 | 37.0 |
| EES04357 | Sorghum | nucleus, plastid | 37.94 | 36.65 |
| Zm00001d014991_P004 | Maize | plastid | 37.42 | 36.28 |
| Os02t0115600-01 | Rice | plastid | 36.77 | 35.29 |
| KRH55977 | Soybean | cytosol, nucleus | 7.04 | 34.62 |
| HORVU6Hr1G008590.12 | Barley | nucleus | 33.64 | 33.77 |
| AT3G23700.1 | Thale cress | plastid | 12.65 | 24.74 |
Protein Annotations
| Gene3D:2.40.50.140 | MapMan:35.2 | EntrezGene:837836 | UniProt:A0A178WFJ4 | EMBL:AB493452 | ProteinID:AEE28930.1 |
| ArrayExpress:AT1G12800 | EnsemblPlantsGene:AT1G12800 | RefSeq:AT1G12800 | TAIR:AT1G12800 | RefSeq:AT1G12800-TAIR-G | EnsemblPlants:AT1G12800.1 |
| TAIR:AT1G12800.1 | EMBL:AY045991 | Unigene:At.25318 | EMBL:BT001968 | GO:GO:0000462 | GO:GO:0000466 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0019843 | GO:GO:0032040 | GO:GO:0034337 | GO:GO:1901259 | InterPro:IPR003029 | InterPro:L21p-like |
| InterPro:NA-bd_OB-fold | RefSeq:NP_172740.1 | ProteinID:OAP16295.1 | PFAM:PF00575 | PFAM:PF00829 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50126 |
| PANTHER:PTHR23270 | PANTHER:PTHR23270:SF7 | UniProt:Q94AJ9 | InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 |
| SUPFAM:SSF50249 | UniParc:UPI000000BD71 | SEG:seg | : | : | : |
Description
Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
Coordinates
chr1:-:4361551..4365414
Molecular Weight (calculated)
85672.3 Da
IEP (calculated)
5.007
GRAVY (calculated)
-0.493
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.