Factsheet for Zm00001d014991_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04357	Sorghum	nucleus, plastid	81.16	80.86
Os02t0115600-01	Rice	plastid	66.12	65.46
TraesCS6D01G047400.1	Wheat	nucleus, plastid	59.04	61.94
TraesCS6B01G056100.1	Wheat	nucleus, plastid	58.79	61.67
TraesCS6A01G041000.1	Wheat	nucleus, plastid	58.53	61.41
HORVU6Hr1G008590.12	Barley	nucleus	54.74	56.68
GSMUA_Achr1P17520_001	Banana	nucleus, plastid	39.57	43.53
CDX98043	Canola	plastid	37.8	41.13
CDY31279	Canola	cytosol	9.23	40.78
CDY60261	Canola	plastid	37.17	40.61
Bra019788.1-P	Field mustard	plastid	37.42	40.55
KRH41145	Soybean	nucleus, plastid	35.15	38.5
VIT_02s0025g03970.t01	Wine grape	plastid	37.29	38.16
AT1G12800.1	Thale cress	plastid	36.28	37.42
KRH55977	Soybean	cytosol, nucleus	7.33	37.18
KRH59845	Soybean	plastid	33.38	36.07
Solyc08g007950.2.1	Tomato	plastid	35.78	32.05
Zm00001d034828_P002	Maize	plastid	10.37	21.87

Protein Annotations

EntrezGene:103626522	Gene3D:2.40.50.140	MapMan:35.2	UniProt:A0A1D6GYL6	ProteinID:AQK67849.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0019843	GO:GO:0034337	GO:GO:1901259	InterPro:IPR003029
InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270	PANTHER:PTHR23270:SF7	InterPro:S1_dom
InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249	UniParc:UPI000221B9F0	EnsemblPlantsGene:Zm00001d014991	EnsemblPlants:Zm00001d014991_P004
EnsemblPlants:Zm00001d014991_T004	SEG:seg	:	:	:	:

Description

Nucleic acid-binding OB-fold-like protein

Coordinates

chr5:+:71272462..71282929

Molecular Weight (calculated)

87148.1 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.490

Length

791 amino acids

Sequence
(BLAST)

001: MEAYAGAAPA AGVFAGYSTA ATRPFIIFLR RRGSPRSGAR RVRLVRAPPP PRAAEDLPPL DKWDIMELDF GRFLGEDPKL TLAKILLKKS DPDASSLDVE
101: KLIAKNRDKL DDILRDCMEA NKKGQGFDTS ESGPSLNTTR PTISKPTESK SSLNISKPSM GRPIQGGTPL TLLRPAGSKP KQDGPSLAQS RPVGSKASED
201: APLFILSRPI GSNPKLRGTP VQDSWPSKES LAAATEFSEA GSISRTGEVD VALRKPTVHQ SQDDDLKSKL KIKPNVNLKM RKDMNEDLRN ISLLQKPDVA
301: KDTVNPEQDH ASASPATVSA TEDNSELEAE NALDEKIATE NVHESSGLDD DSAAGLQPSA QTFIQETSTA GPVDNQSATS NNFSMQAFLQ GKPRRENQSA
401: EILPSEVDEK MTATDNKNYV DDGGNVLPSK LEDITESDWT RLENYASTGE KVEVELINCS AKGFVVSLDS LIGFLPYRNL ATKWKFLAFE TWLRRKGGDP
501: SLYKQSLGLE DSFEVNDTNL EPESSSVSKI AGEDQESLSS KPKFEDLIRA YNQEKSKFLS SFIGQRLRVS VVLADRNSKR IFFSMKPKES EEMIQKKKNL
601: MARLNVGDII QCTIKRFVYF GIFVEVEGVP ALIQQWEVSW DDTLDPAVSY KIGQVVDAKV IQLDYNNIRI FLSLKDVKPN PSVGALESVV GEDLSFGGAL
701: EPVQADFEWP EVDALMEEMR RTEGVRDVYK GRFFQSPGLA PTFQVYMAPV VGPKYKLLAR YGNSVQEVMV ETALGKEELK EAVLMCTNRV S

Best Arabidopsis Sequence Match ( AT1G12800.1 )
(BLAST)

001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE

Arabidopsis Description

Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.