CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41145	Soybean	nucleus, plastid	78.28	79.36
KRH55977	Soybean	cytosol, nucleus	15.16	71.15
CDY31279	Canola	cytosol	11.48	46.93
VIT_02s0025g03970.t01	Wine grape	plastid	48.91	46.31
CDY60261	Canola	plastid	45.63	46.13
CDX98043	Canola	plastid	45.63	45.94
Bra019788.1-P	Field mustard	plastid	45.63	45.75
AT1G12800.1	Thale cress	plastid	45.22	43.16
GSMUA_Achr1P17520_001	Banana	nucleus, plastid	40.85	41.59
Solyc08g007950.2.1	Tomato	plastid	46.04	38.17
TraesCS6D01G047400.1	Wheat	nucleus, plastid	35.66	34.62
TraesCS6B01G056100.1	Wheat	nucleus, plastid	35.25	34.22
TraesCS6A01G041000.1	Wheat	nucleus, plastid	35.25	34.22
EES04357	Sorghum	nucleus, plastid	36.61	33.75
Zm00001d014991_P004	Maize	plastid	36.07	33.38
Os02t0115600-01	Rice	plastid	35.79	32.79
HORVU6Hr1G008590.12	Barley	nucleus	32.65	31.28
KRG97374	Soybean	nucleus	10.79	20.9
KRH31544	Soybean	plastid	10.66	20.21

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.2	UniProt:A0A0R0K588	EMBL:ACUP02003342	EnsemblPlantsGene:GLYMA_05G205700	GO:GO:0000462
GO:GO:0000466	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	InterPro:IPR003029	EnsemblPlants:KRH59845	ProteinID:KRH59845
ProteinID:KRH59845.1	InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270	PANTHER:PTHR23270:SF7
InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249	UniParc:UPI0006EDBAD0	:

Description

hypothetical protein

Coordinates

chr5:-:38861059..38866968

Molecular Weight (calculated)

82969.9 Da

IEP (calculated)

5.152

GRAVY (calculated)

-0.572

Length

732 amino acids

Sequence
(BLAST)

001: MGSLPLTSSK PFFTQLHWFS SDRTRTLSLN QRVKVFASRS RNEGEKEPPK FDSYDLMELK FGRLLGEDPK LTLAKIMGRK VNPDASYLDI EKAFYKNKGK
101: IVEVEQVPFE GSKGGRSSRK LDDQGLVRPV PAKGMEFKSD DSKPALEIKK PVRAENKVGS VRKSIVPNVI LRKPAVLKDD GDGDTLTSRL RMRPKMQDEQ
201: VKDTFSDMTL LRKPEAAVAK NTDAIQEPSS SVDGQGNNDD ELKMWNEELS DEIGGFTLLE RPHKPSGEKE EKLEEVNVMI PNDGLEQHEQ RQLEFHEEPN
301: DLCQLSDLKS DDSRVELSAE AALQAKPKRL DKYVKQTSKF VGEEGASRNI GGRTNNDDLG KIVDMSDFQE SEDADWTRTQ DLIKTGDRED VELVSCNTKG
401: FIVSFGSLVG FLPYRNLASK WKFLAFESWL KQKGLDPSIY KQNSGTITSF DAEIKNLSPD SPPSLEIDGK VEDRISPDMK LEDLLRIYDQ EKLKFLSSFV
501: GQKIKANVLV ADRKMRKLIF SLRPKEKEEL VEKKRNLMKI AYFGIFVEVE GVSALIHQSE LSWDATLNPA SYFQIGQVLE AKVHQINFAL ERIFLSLKEV
601: MPDPLMNPLE AIVGDHDPLD GRLEAAQTDV ELDYWFDMTN HQIMLIFGQW PEVDSLVEEL QKIEGVQSVS KGRFFRSPGL APTFQVYMAS IFEDQYKLLA
701: RSGNKIQEVI VQTSLDKERM KSAVMTCANR VE

Best Arabidopsis Sequence Match ( AT1G12800.1 )
(BLAST)

001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE

Arabidopsis Description

Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.