CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98043	Canola	plastid	69.83	17.19
CDY60261	Canola	plastid	68.72	16.99
KRH41145	Soybean	nucleus, plastid	49.72	12.33
GSMUA_Achr1P17520_001	Banana	nucleus, plastid	46.37	11.54
KRH59845	Soybean	plastid	46.93	11.48
VIT_02s0025g03970.t01	Wine grape	plastid	49.16	11.38
Solyc08g007950.2.1	Tomato	plastid	47.49	9.63
TraesCS6A01G041000.1	Wheat	nucleus, plastid	39.66	9.42
TraesCS6B01G056100.1	Wheat	nucleus, plastid	39.66	9.42
TraesCS6D01G047400.1	Wheat	nucleus, plastid	39.66	9.42
EES04357	Sorghum	nucleus, plastid	41.34	9.32
HORVU6Hr1G008590.12	Barley	nucleus	39.66	9.29
Os02t0115600-01	Rice	plastid	41.34	9.26
Zm00001d014991_P004	Maize	plastid	40.78	9.23
CDX77487	Canola	plastid	17.88	8.44
CDX85123	Canola	plastid	17.32	8.29
KRH55977	Soybean	cytosol, nucleus	4.47	5.13

Protein Annotations

EnsemblPlants:CDY31279	EnsemblPlantsGene:GSBRNA2T00047441001	PANTHER:PTHR23270	PANTHER:PTHR23270:SF7	ProteinID:CDY31279	ProteinID:CDY31279.1
SEG:seg	UniParc:UPI0004EAFC69	UniProt:A0A078H1G7	MapMan:35.2	:	:

Description

BnaC08g15740DBnaC08g15740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1G7]

Coordinates

chrLK032269:-:471310..472156

Molecular Weight (calculated)

20179.0 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.454

Length

179 amino acids

Sequence
(BLAST)

001: MEKLEIVELC NYPRLKIHQF PTETQLDGET SSEEKDIDPS LYRQNLGVIG AQDVTSKAPT SDSSLVDSEV GNIVNGEESS SMKLDYLLMV CDREKQKFLS
101: SFVGQKIKVN VVMANRNTRK LIFSMRTREN EEEVEKKRNL MAKLCVGDVE GVTALIHQSE VSWDATLDHA SCFKMGQVE

Best Arabidopsis Sequence Match ( AT1G12800.1 )
(BLAST)

001: MDVLALSSSA SAAAPSASLA GKFLSFPSRV RVRRNRENLL AKQKKFLVSA SKREEPKLNE WDQMELNFGR LLGEDPKLTL AKIVARKVDP EASFIDIEKS
101: FYKNKGKIPE VEEIPLDWSK DNKKKSTSSL DGLKLVKPVL KDGVKFERPV MKKPSPVLKK PLVEAVAAPK VQRLPNVILR KPSSFYTSNG DDEESKLRLK
201: PNLTLKMRNE RENERFSDMT LLRKPEPVSV VAEEEDKPLS DDLTMEEGEQ EGGTYSQYTL LEKPEARLQP VNVEEEVGDS GGVESSEIVN NSIQKPEARP
301: ELENIEKEVA DSGVLESSEI ENNSIPTEMQ LNSEMSSEEK TINSDPLERI PSKPISQTIV EASLQGKPQR LDPSSAEPSV PNIGKPSVVN HEGRQVSVEL
401: KGPPTRSSLE ENDWNKAESL VKTELRADVE LISSSTRGFA VSYGSLIGFL PYRNLAAKWK FLAFESWLRR KGVDPSPYRQ NLGVIGGQDV TSKSPSPDSS
501: LDSEVATTIN GEVSSDMKLE DLLMVYDREK QKFLSSFVGQ KIKVNVVMAN RNSRKLIFSM RPRENEEEVE KKRTLMAKLR VGDVVKCCIK KITYFGIFCE
601: LEGVPALVHQ SEVSWDATLD PASYFKIGQI VEAKVHQLDF ALERIFLSLK EITPDPLTEA LESVVGGDND QLGGRLQAAE LDAEWPDVES LIKELEMVEG
701: IQSVSKSRFF LSPGLAPTFQ VYMAPMFENQ YKLLARAGNR VQELIVEASL SKEEMKSTIM SCTNRVE

Arabidopsis Description

Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.