CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014973.1-P	Field mustard	plastid	98.42	97.64
CDX85123	Canola	plastid	93.93	95.19
AT3G23700.1	Thale cress	plastid	85.49	82.65
GSMUA_Achr11P...	Banana	mitochondrion	53.3	65.58
VIT_05s0062g00830.t01	Wine grape	plastid	60.69	58.97
KRG97374	Soybean	nucleus	58.58	58.73
PGSC0003DMT400042869	Potato	plastid	59.63	58.7
Solyc09g097910.2.1	Tomato	nucleus	59.63	57.95
KRH31544	Soybean	plastid	58.84	57.77
EER90528	Sorghum	plastid	48.28	50.0
TraesCS4A01G340600.1	Wheat	plastid	47.23	48.38
TraesCS5D01G532100.1	Wheat	plastid	47.23	48.38
Zm00001d034828_P002	Maize	plastid	47.49	48.0
TraesCS5B01G534400.1	Wheat	plastid	46.44	40.93
Os03t0844900-01	Rice	plasma membrane	35.09	39.23
HORVU5Hr1G120650.5	Barley	nucleus	45.91	35.73
CDY31279	Canola	cytosol	8.44	17.88
CDX98043	Canola	plastid	24.01	12.52
CDY60261	Canola	plastid	23.75	12.43

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	GO:A0A078CL82	EnsemblPlants:CDX77487	ProteinID:CDX77487	ProteinID:CDX77487.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00128357001	InterPro:IPR003029	InterPro:NA-bd_OB-fold
PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316
SUPFAM:SSF50249	UniParc:UPI0004EF27BA	SEG:seg	:	:	:

Description

BnaA07g06250D

Coordinates

chrLK031811:+:1126072..1128624

Molecular Weight (calculated)

41623.6 Da

IEP (calculated)

5.670

GRAVY (calculated)

-0.212

Length

379 amino acids

Sequence
(BLAST)

001: MAVFGGANLG SVSFSSHLLN QHSCFLSCPL RLLPSPSSSN RTSLLCVVKS FSGSVTAGTD TSSDQSLLRD TFTDAGPPRM STDWKLAKAY CKSGDTFEGE
101: VEGFNGGGLL IRFHSLVGFL PYPQLTPSRS CKEPQKSIHE IAKTLVGSTL PVKVVQADEE NKKLILSEKL ALWPKYSQNV NVGDVFTGRV GSVEDYGAFI
201: HLRFDDGLYH LTGLVHVSEV SWDYVQDVRD VLRDGDEVRV IVTNIDKEKS RITLSIKQLE DDPLLETLDK VILKDSSSGS PSLSSNNGDT IEPLPGLETI
301: LEELLQEEGI VAVKINRQGF EKRVVSQDLQ LWLSNTPPSE GKFVLLARAG RQVQEIHLTT SLDQQGIKKA LQRVLERVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.