Factsheet for PGSC0003DMT400042869

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g097910.2.1	Tomato	nucleus	95.84	94.62
GSMUA_Achr11P...	Banana	mitochondrion	53.51	66.88
VIT_05s0062g00830.t01	Wine grape	plastid	65.45	64.62
KRG97374	Soybean	nucleus	61.3	62.43
KRH31544	Soybean	plastid	61.82	61.66
CDX77487	Canola	plastid	58.7	59.63
CDX85123	Canola	plastid	57.92	59.63
Bra014973.1-P	Field mustard	plastid	58.7	59.16
AT3G23700.1	Thale cress	plastid	58.7	57.65
EER90528	Sorghum	plastid	50.91	53.55
TraesCS4A01G340600.1	Wheat	plastid	48.57	50.54
Zm00001d034828_P002	Maize	plastid	49.09	50.4
TraesCS5D01G532100.1	Wheat	plastid	47.27	49.19
TraesCS5B01G534400.1	Wheat	plastid	47.27	42.33
Os03t0844900-01	Rice	plasma membrane	37.14	42.18
HORVU5Hr1G120650.5	Barley	nucleus	46.75	36.96

Protein Annotations

EnsemblPlants:PGSC0003DMT400042869	EnsemblPlantsGene:PGSC0003DMG400016625	EntrezGene:102601873	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR003029	InterPro:NA-bd_OB-fold	InterPro:S1_dom	InterPro:S1_domain	PANTHER:PTHR23270
PFAM:PF00575	PFscan:PS50126	PGSC:PGSC0003DMG400016625	RefSeq:XP_015169621.1	SMART:SM00316	SUPFAM:SSF50249
UniParc:UPI00029587AD	UniProt:M1BDQ7	MapMan:35.1	:	:	:

Description

S1 RNA-binding domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016625]

Coordinates

chr9:+:60424383..60428986

Molecular Weight (calculated)

42770.8 Da

IEP (calculated)

5.659

GRAVY (calculated)

-0.256

Length

385 amino acids

Sequence
(BLAST)

001: MGIVSGGNGF LSQFFTSDSA ASTHQFCCFS VNSSPLHMNF SRSGCLVKRG SLLSPRVSVS TTGNAKIDGV DDQLSLSPDE IKPARKSADW KAARTYSERG
101: LIFEGKVEGF NGGGLLIRFY SLVGFLPFPQ MSPYHSCKEP QKTIQEIARD LTGSVLSVKV IQADEDRRRL IFSEKEASWL KFSNKINVGD TYQAKVGSVE
201: DYGAFVHLRF PDGSYHLTGL VHVSEVSWDL VHDVRDILTE GDDVRVKIIN IDREKSRITL SIKQLEEDPL LETLDKVIHK DASVHTNSLD SNGSSIIEPL
301: PGLETIIEEL LQEDGIYDII ISRQGFEKRV VSQDLQLWLS NAPATGDQFT LLARAGRQVQ EIQLTTSLDQ EGIKRALQRV LERVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.