Factsheet for HORVU5Hr1G120650.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G532100.1	Wheat	plastid	62.63	82.43
TraesCS4A01G340600.1	Wheat	plastid	62.63	82.43
TraesCS5B01G534400.1	Wheat	plastid	63.04	71.4
EER90528	Sorghum	plastid	52.98	70.49
Zm00001d034828_P002	Maize	plastid	53.18	69.07
GSMUA_Achr11P...	Banana	mitochondrion	41.89	66.23
Os03t0844900-01	Rice	plasma membrane	42.3	60.77
VIT_05s0062g00830.t01	Wine grape	plastid	41.07	51.28
KRG97374	Soybean	nucleus	37.17	47.88
PGSC0003DMT400042869	Potato	plastid	36.96	46.75
KRH31544	Soybean	plastid	36.76	46.37
CDX85123	Canola	plastid	35.52	46.26
Solyc09g097910.2.1	Tomato	nucleus	36.96	46.15
Bra014973.1-P	Field mustard	plastid	36.14	46.07
CDX77487	Canola	plastid	35.73	45.91
AT3G23700.1	Thale cress	plastid	35.73	44.39
HORVU6Hr1G008590.12	Barley	nucleus	17.86	11.39

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	UniProt:A0A287SYK2	GO:GO:0000481	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0016043	GO:GO:0032508	GO:GO:0034337	EnsemblPlantsGene:HORVU5Hr1G120650
EnsemblPlants:HORVU5Hr1G120650.5	InterPro:IPR003029	InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270
InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249	UniParc:UPI000B47F086	SEG:seg

Description

No Description!

Coordinates

chrchr5H:-:657968342..657972452

Molecular Weight (calculated)

52901.6 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.357

Length

487 amino acids

Sequence
(BLAST)

001: RHETHACHDS TWRLSRRPPP SAGMAYCQNL NYKKISKENA GEDLDARPPR DADGVAAPSL PPNLSNAPTK SIRPFRRRTQ ADPRSSSRPA LPVHGHSFLT
101: TTSPPPTAHR SPPAYEMLSA SLKPPPSLAP ISPSSRAPAP AAAASFPPLL PSRGRVRLSA AASEGATVSQ EDAASVSAAF EEARLAQFAA DWKAVRADKD
201: QGKVLTLPVL RSNTGGLILK YNSMQGFVPN PLLSPAHWCK DPKRPIQDVT KDLVGSSVSV KVVEANEAEK KLVFSEKDAS WSLYSSQVKI GGIYDGIVGS
301: VFHYGAFVHL QFPDGNYHLT GLVHISEVSW DLVQDVQDFL TEGDTVKVIV VNVDAEKSRI GLSIRQLEED PLLETLDKII PLEPDLSPDA EAASSPPEIE
401: LLPGLDGICN ELLQEDGITD VRFGRQALEK RVVSQDLELW LSSVPAKDNQ YKLLARAGRQ VQEVYLTTSL DQEGVKKAVQ RVLGRVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.