Factsheet for Bra014973.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77487	Canola	plastid	97.64	98.42
AT3G23700.1	Thale cress	plastid	85.6	83.42
GSMUA_Achr11P...	Banana	mitochondrion	53.4	66.23
VIT_05s0062g00830.t01	Wine grape	plastid	60.47	59.23
KRG97374	Soybean	nucleus	58.38	58.99
PGSC0003DMT400042869	Potato	plastid	59.16	58.7
KRH31544	Soybean	plastid	58.64	58.03
Solyc09g097910.2.1	Tomato	nucleus	59.16	57.95
EER90528	Sorghum	plastid	48.17	50.27
TraesCS4A01G340600.1	Wheat	plastid	47.38	48.92
TraesCS5D01G532100.1	Wheat	plastid	47.38	48.92
Zm00001d034828_P002	Maize	plastid	47.38	48.27
TraesCS5B01G534400.1	Wheat	plastid	46.6	41.4
Os03t0844900-01	Rice	plasma membrane	35.08	39.53
HORVU5Hr1G120650.5	Barley	nucleus	46.07	36.14
Bra019788.1-P	Field mustard	plastid	23.3	12.19

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	EnsemblPlantsGene:Bra014973	EnsemblPlants:Bra014973.1	EnsemblPlants:Bra014973.1-P	GO:GO:0000481
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016043	GO:GO:0032508
GO:GO:0034337	InterPro:IPR003029	UniProt:M4DEQ1	InterPro:NA-bd_OB-fold	PFAM:PF00575	PFscan:PS50126
PANTHER:PTHR23270	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SUPFAM:SSF50249	UniParc:UPI0002540DF4
SEG:seg	:	:	:	:	:

Description

AT3G23700 (E=5e-151) | S1 RNA-binding domain-containing protein

Coordinates

chrA07:+:4674825..4677019

Molecular Weight (calculated)

41775.6 Da

IEP (calculated)

5.463

GRAVY (calculated)

-0.235

Length

382 amino acids

Sequence
(BLAST)

001: MAVFGGANLG SVSFSSHLLN QHSCFLSCPL KLLPSSSSSS SSNRTSLLCV VKSFSGSVTA GTDTSSDQSL LRDTSTDAGP PRMSTDWKLA KAYCKSGDTF
101: EGEVEGFNGG GLLIRFHSLV GFLPYPQLTP SRSCKEPQKS IHEIAKTLVG STLPVKVVQA DEENKKLILS EKLALWPKYS QNVNVGDVFT GRVGSVEDYG
201: AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS SGSPSLSSSN GDTIEPLPGL
301: ETILEELLQE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSEGKFVLLA RAGRQVQEIH LTTSLDQQGI KKALQRVLER VP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.