Factsheet for TraesCS5D01G532100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G340600.1	Wheat	plastid	96.22	96.22
TraesCS5B01G534400.1	Wheat	plastid	88.38	76.05
EER90528	Sorghum	plastid	70.27	71.04
Zm00001d034828_P002	Maize	plastid	70.27	69.33
GSMUA_Achr11P...	Banana	mitochondrion	55.14	66.23
HORVU5Hr1G120650.5	Barley	nucleus	82.43	62.63
Os03t0844900-01	Rice	plasma membrane	56.22	61.36
VIT_05s0062g00830.t01	Wine grape	plastid	52.43	49.74
KRG97374	Soybean	nucleus	50.54	49.47
KRH31544	Soybean	plastid	50.27	48.19
CDX85123	Canola	plastid	48.11	47.59
Bra014973.1-P	Field mustard	plastid	48.92	47.38
PGSC0003DMT400042869	Potato	plastid	49.19	47.27
CDX77487	Canola	plastid	48.38	47.23
Solyc09g097910.2.1	Tomato	nucleus	48.92	46.41
AT3G23700.1	Thale cress	plastid	47.84	45.15
TraesCS6D01G047400.1	Wheat	nucleus, plastid	22.7	11.14

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	GO:GO:0000481	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0016043	GO:GO:0032508	GO:GO:0034337	InterPro:IPR003029	InterPro:NA-bd_OB-fold
PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316
SUPFAM:SSF50249	EnsemblPlantsGene:TraesCS5D01G532100	EnsemblPlants:TraesCS5D01G532100.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:547273842..547277169

Molecular Weight (calculated)

40201.0 Da

IEP (calculated)

5.043

GRAVY (calculated)

-0.141

Length

370 amino acids

Sequence
(BLAST)

001: MLSASLKPPP SLPAISPSSR APALPAASFL SLLPSRGRVR LSAAASEGAT VSQEDAASVS AAFEEARLAQ FAADWKAVRA DKDQGKILTL PVLRSNTGGL
101: ILKYNSMQGF VPNPLLSPAH WSKDPKRPIQ DVTKDLVGSS VSVKVVEANE AEKKLVFSEK DASWSMYSSQ VKIGGTYDGI VGSVFHYGAF VHLRFPDGKY
201: HLTGLVHISE VSWDLVQDVQ DFLTEGDIVK VIVVNVDAEK SRIGLSIRQL EEDPLLETLD KIIPLEPDLS PDAETASSPP EIELLPGLDG ICNELLQEDG
301: ITDVRFGRQA LEKRVVSQDL ELWLSSVPAK DNQYKLLARA GRQVQEVYLT TSLDQEGVKK AVQRVLGRVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.