Factsheet for TraesCS5B01G534400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G532100.1	Wheat	plastid	76.05	88.38
TraesCS4A01G340600.1	Wheat	plastid	75.35	87.57
EER90528	Sorghum	plastid	59.3	69.67
Zm00001d034828_P002	Maize	plastid	59.07	67.73
GSMUA_Achr11P...	Banana	mitochondrion	47.21	65.91
HORVU5Hr1G120650.5	Barley	nucleus	71.4	63.04
Os03t0844900-01	Rice	plasma membrane	46.28	58.7
KRG97374	Soybean	nucleus	42.79	48.68
VIT_05s0062g00830.t01	Wine grape	plastid	43.49	47.95
PGSC0003DMT400042869	Potato	plastid	42.33	47.27
KRH31544	Soybean	plastid	42.09	46.89
CDX85123	Canola	plastid	40.7	46.79
Solyc09g097910.2.1	Tomato	nucleus	42.33	46.67
Bra014973.1-P	Field mustard	plastid	41.4	46.6
CDX77487	Canola	plastid	40.93	46.44
AT3G23700.1	Thale cress	plastid	40.93	44.9
TraesCS6B01G056100.1	Wheat	nucleus, plastid	21.16	12.07

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	GO:GO:0000481	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0016043	GO:GO:0032508	GO:GO:0034337	InterPro:IPR003029	InterPro:NA-bd_OB-fold
PFAM:PF00575	PFscan:PS50126	PANTHER:PTHR23270	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316
SUPFAM:SSF50249	EnsemblPlantsGene:TraesCS5B01G534400	EnsemblPlants:TraesCS5B01G534400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:-:690703820..690707003

Molecular Weight (calculated)

46559.7 Da

IEP (calculated)

6.358

GRAVY (calculated)

-0.130

Length

430 amino acids

Sequence
(BLAST)

001: MLSASLKPPP SLAALSPSSR APAPPAASFP APRRSCLRLS AAAASEGATV SQEDAASVSA AFEEARLAQV RPHGRAPSLA SAVYSLLLPA HASPVAVLGR
101: CRGARELFDA MPAGAITHHH ETMRLPCCMQ FASDWKAVRA DKDQGKILTL PVLRSNTGGL ILKYNSMQGF VPNPLLSPAH WSKDPKRPIQ DVTKDLVGSS
201: VSVKVVEANE AEKKLVFSEK DASWSMYSSQ VKIGGTYDGI VGSVFHYGAF VHLRFPDGKY HLTGLVHISE VSWDLVQDVQ DFLTEGDIVK VIVVNVDAEK
301: SRIGLSIRQL EEDPLLETLD KIIPLEPDLS PDAETASSPP EIELLPGLDG ICNELLQEDG ITDVRFGRQA LEKRVVSQDL ELWLSSVPAK DNQYKLLARA
401: GRQVQEVYLT TSLDQEGVKK AVQRVLGRVP

Best Arabidopsis Sequence Match ( AT3G23700.1 )
(BLAST)

001: MAVFSGATTL GSVSFASHLF DQQSTFLSCP LRLLPSSSSS SSNRNSLVCI VKSFSSSATA DTDRNSDQSA SSSVLSASNS LLRDTSDEAS AAGPSDWKTA
101: KAYCKSGDTF EGEVQGFNGG GLLIRFHSLV GFLPYPQLSP SRSCKEPQKS IHEIAKTLVG SKLPVKVVQA DEENRKLILS EKLALWPKYS QNVNVGDVFN
201: GRVGSVEDYG AFIHLRFDDG LYHLTGLVHV SEVSWDYVQD VRDVLRDGDE VRVIVTNIDK EKSRITLSIK QLEDDPLLET LDKVILKDSS TGSPSLSSNN
301: GDTIEPLPGL ETILEELLKE DGIEAVKINR QGFEKRVVSQ DLQLWLSNTP PSDGKFVLLA RAGRQVQEIH LTTSLEQGGI KKALQHVLER VP

Arabidopsis Description

At3g23700/MYM9_3 [Source:UniProtKB/TrEMBL;Acc:Q9LK47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.