Factsheet for VIT_05s0020g03470.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0043g00960.t01
VIT_05s0020g03470.t01
VIT_06s0004g05490.t01
VIT_07s0005g00420.t01
VIT_07s0005g01100.t01
VIT_07s0151g00650.t01
VIT_09s0002g01530.t01
VIT_12s0057g01240.t01
VIT_18s0089g00920.t01
VIT_18s0122g00660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	VIT_18s0122g00660.t01	AT1G20880.1	21798944
AT3G22440.1	VIT_18s0089g00920.t01	AT1G33470.1	21798944
AT3G22440.1	VIT_12s0057g01240.t01	AT2G04400.1	15714319
AT3G22440.1	VIT_07s0005g01100.t01	AT4G02150.1	21798944
AT3G22440.1	VIT_05s0020g03470.t01	AT4G14900.1	21798944
AT4G14900.1	VIT_07s0005g00420.t01	AT2G47700.1	21798944
AT4G14900.1	VIT_04s0043g00960.t01	AT3G13990.1	21798944
AT4G14900.1	VIT_09s0002g01530.t01	AT3G13990.1	21798944
AT4G14900.1	VIT_07s0151g00650.t01	AT5G48385.1	21798944
AT4G14900.1	VIT_06s0004g05490.t01	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91301	Soybean	cytosol	76.63	76.34
PGSC0003DMT400077344	Potato	nucleus	74.71	75.88
Solyc09g076050.2.1	Tomato	nucleus	74.52	75.68
KRH35520	Soybean	cytosol	76.63	75.47
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	72.41	71.05
CDY46317	Canola	cytosol, nucleus, plastid	70.31	69.9
CDY34252	Canola	cytosol, nucleus, plastid	69.35	69.35
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	70.88	69.29
AT4G14900.1	Thale cress	nucleus	70.11	68.8
GSMUA_Achr2P12700_001	Banana	nucleus	57.28	61.15
GSMUA_AchrUn_...	Banana	cytosol, nucleus	27.01	60.26
GSMUA_Achr7P01520_001	Banana	nucleus	55.94	59.84
GSMUA_Achr4P28440_001	Banana	cytosol	31.99	54.4
CDY38318	Canola	nucleus	53.83	52.92
Os07t0173200-02	Rice	cytosol	50.0	48.88
Os03t0794900-01	Rice	nucleus	48.85	46.36
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	48.47	43.77
Zm00001d018911_P001	Maize	cytosol	49.62	42.67
KXG34492	Sorghum	nucleus	49.62	41.91
HORVU5Hr1G104870.1	Barley	cytosol	44.44	41.8
TraesCS5A01G434500.1	Wheat	cytosol	43.68	41.16
TraesCS5D01G442300.1	Wheat	cytosol	43.3	40.94
TraesCS5B01G437500.2	Wheat	cytosol	43.3	40.72
VIT_11s0016g04070.t01	Wine grape	nucleus	34.67	33.96
HORVU3Hr1G033190.1	Barley	nucleus	6.32	31.13
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	33.14	30.73
VIT_19s0090g01700.t01	Wine grape	cytosol	20.69	28.05
VIT_07s0129g00610.t01	Wine grape	cytosol	30.65	27.73
VIT_19s0090g01710.t01	Wine grape	cytosol	12.26	23.62
VIT_17s0000g00850.t01	Wine grape	cytosol, peroxisome, plasma membrane	12.45	21.81
VIT_14s0030g00690.t01	Wine grape	extracellular, golgi	17.82	21.28
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	11.49	20.62
VIT_19s0014g00060.t01	Wine grape	nucleus	9.0	14.83

Protein Annotations

EntrezGene:100249314	wikigene:100249314	MapMan:35.1	EMBL:AM448952	ProteinID:CAN69766	ProteinID:CAN69766.1
ProteinID:CCB50425	ProteinID:CCB50425.1	UniProt:F6HDQ4	EMBL:FN595749	InterPro:Frigida	GO:GO:0000003
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154
EntrezGene:LOC100249314	wikigene:LOC100249314	PFAM:PF07899	PANTHER:PTHR31791	PANTHER:PTHR31791:SF2	TIGR:TC64746
TIGR:TC67814	UniParc:UPI00019832F5	ArrayExpress:VIT_05s0020g03470	EnsemblPlantsGene:VIT_05s0020g03470	EnsemblPlants:VIT_05s0020g03470.t01	unigene:Vvi.3015
RefSeq:XP_002282465	RefSeq:XP_002282465.1	SEG:seg	:	:	:

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6HDQ4]

Coordinates

chr5:+:5255074..5259707

Molecular Weight (calculated)

57471.8 Da

IEP (calculated)

8.166

GRAVY (calculated)

-0.392

Length

522 amino acids

Sequence
(BLAST)

001: MGSIPDPGDI SGELNQPSFD DFQKQTSLMT SCTLLWKELS DHFTSLEQNL QKKSEALKNK FQTLDHHTKE SLGVLKKREV TIDGSVEIAL GKVEESREAA
101: LIALLKGAQD GEVDDSEGLL LKLKSFCLKM DSKEFWRFIT ARKKELDALR AQTPEALAEC VDPAKFVLEA ISEVFPVDKR VEKSERSNDL GWACVLVLES
201: LIPVVVDPVL GKSRLLVTPS VKERAKDIAE TWKASLDQRG GIENVKTPDV HTFLQHLVTF GIVKEEDVDL YRKLVVGSAW RKQMPKLAVS LGLGDKMADM
301: IEELVNRGQQ VDAVHFTYEV GLVDKFPPVP LLKAFLRDSK KAATSILEDP NNSGRAVNLA GRKEQSALRA VIKCIEEYKL EAEFPPENLK KRLEQLEKAK
401: TDKKRPAAVP ANKRTRASNG GPMPPAKAGR LTNAYVSSFP AAPTFIRSPS HTQYPAAVPA YPYDRPAAPA MYGSRSPPAN PYAYSPEAAP PLAGSYPGAP
501: INYPAYGGYG NGMAPAYQQA YY

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.