Factsheet for VIT_07s0005g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g09190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47700.1	VIT_17s0000g09190.t01	AT3G48240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g02280.t01	Wine grape	nucleus	52.64	49.41
CDY53013	Canola	nucleus	32.24	34.78
AT2G47700.1	Thale cress	nucleus	31.23	34.64
CDY64147	Canola	cytosol	13.6	34.39
Bra004436.1-P	Field mustard	nucleus	31.74	33.25
CDX80127	Canola	nucleus	31.74	33.25
Os05t0154600-01	Rice	nucleus	35.26	32.11
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	34.51	31.57
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	34.26	31.34
GSMUA_Achr2P02250_001	Banana	nucleus	22.67	30.3
EES19051	Sorghum	nucleus	33.25	30.21
TraesCS1A01G095100.1	Wheat	cytosol	28.97	29.41
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	32.49	28.35
CDX85292	Canola	cytosol, golgi, peroxisome	13.85	27.92
GSMUA_Achr5P27050_001	Banana	nucleus	28.46	27.16
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	32.49	26.71
KXG32474	Sorghum	nucleus	30.73	26.7
HORVU1Hr1G022130.3	Barley	nucleus, plastid	34.51	25.23
Zm00001d040789_P001	Maize	nucleus	29.22	25.05
Zm00001d037596_P001	Maize	nucleus	34.01	23.85
GSMUA_Achr8P06630_001	Banana	nucleus	31.49	23.45
CDY31489	Canola	cytosol	17.63	20.29

Protein Annotations

EntrezGene:100267498	wikigene:100267498	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	ProteinID:CBI36857	ProteinID:CBI36857.3
UniProt:D7U291	EMBL:FN596502	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009791	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218	GO:GO:0010468	GO:GO:0010629
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0090227	GO:GO:2000028	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100267498	wikigene:LOC100267498	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937
PANTHER:PTHR22937:SF69	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0001BE4ADC	ArrayExpress:VIT_07s0005g00420	EnsemblPlantsGene:VIT_07s0005g00420
EnsemblPlants:VIT_07s0005g00420.t01	unigene:Vvi.11314	RefSeq:XP_002268579	RefSeq:XP_002268579.1	RefSeq:XP_010652188.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:3146487..3160025

Molecular Weight (calculated)

43458.8 Da

IEP (calculated)

6.446

GRAVY (calculated)

-0.514

Length

397 amino acids

Sequence
(BLAST)

001: MDDDDVGGVE PPSHGEVSFV SCSICLDLVT DNGERSRAKL QCGHEFHLDC IGSAFNMKGA MQCPNCRKIE RGRWLFANGS ARSFPEFSMD DWTPDEETYD
101: FNYSEMPFRV QWCPFSGFTQ VRSSFEEVES PSTTHHDLQG HHAILSEHAA ASSAAHSYVA YFGPIPPTHS NSSESVDDLN FNHHWNSLSA HSEIFSSHAF
201: PAIDIQYQSW GHHSPPFSPT SSHINGAEQA PALPATLRSM RGESDAMTRS GSFVHPLLFG PGSGHRAGSA FVSSIVPNHP GNSVLRTYER IHISHALPHQ
301: HPPPNSPGMP TSIVPGVRRF NGPRALPPVV PAASQSDHSA GFYIFPPSGA SIRNIHEAEN PSLNHFHAWD SGWGSFHQAT GGSDSGSRSS SFWRHWS

Best Arabidopsis Sequence Match ( AT2G47700.1 )
(BLAST)

001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF

Arabidopsis Description

RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.