Factsheet for Bra004436.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001347.1-P
Bra015843.1-P
Bra018071.1-P
Bra029711.1-P
Bra041101.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47700.1	Bra015843.1-P	AT1G75440.1	21798944
AT2G47700.1	Bra001347.1-P	AT3G08690.1	21798944
AT2G47700.1	Bra029711.1-P	AT3G08690.1	21798944
AT2G47700.1	Bra041101.1-P	AT3G08690.1	21798944
AT2G47700.1	Bra018071.1-P	AT3G48240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80127	Canola	nucleus	100.0	100.0
AT2G47700.1	Thale cress	nucleus	68.07	72.07
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.41	45.83
VIT_07s0005g00420.t01	Wine grape	nucleus	33.25	31.74
GSMUA_Achr2P02250_001	Banana	nucleus	22.43	28.62
Bra040540.1-P	Field mustard	nucleus	31.13	28.1
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	31.66	27.65
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	31.66	27.65
EES19051	Sorghum	nucleus	31.66	27.46
Bra001153.1-P	Field mustard	nucleus	29.82	27.23
Os05t0154600-01	Rice	nucleus	31.13	27.06
TraesCS1A01G095100.1	Wheat	cytosol	26.39	25.58
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	31.4	24.64
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	29.02	24.18
GSMUA_Achr5P27050_001	Banana	nucleus	26.39	24.04
HORVU1Hr1G022130.3	Barley	nucleus, plastid	32.19	22.47
KXG32474	Sorghum	nucleus	26.39	21.88
Zm00001d040789_P001	Maize	nucleus	26.12	21.38
Zm00001d037596_P001	Maize	nucleus	30.87	20.67
Bra039429.1-P	Field mustard	plastid	7.12	19.42
GSMUA_Achr8P06630_001	Banana	nucleus	27.18	19.32
Bra013110.1-P	Field mustard	nucleus	15.04	19.26

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra004436	EnsemblPlants:Bra004436.1	EnsemblPlants:Bra004436.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0010114
GO:GO:0010218	GO:GO:0010468	GO:GO:0010629	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0090227	GO:GO:2000028	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4CJQ2	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF69	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002547FD3
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT2G47700 (E=4e-147) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:+:107347..109273

Molecular Weight (calculated)

42757.0 Da

IEP (calculated)

6.552

GRAVY (calculated)

-0.815

Length

379 amino acids

Sequence
(BLAST)

001: MAGANDDDYD RNNRRIANQS TDSAADVPGK RGNEDSSSSL VEVSCSICLE LVVDDGSRSS AKLQCGHQFH LDCIGSAFNM KGTMQCPNCR NVEKGQWLFA
101: NASTRLFPEF VMEDWIPEED LYALSYPEMQ YRVHWCPFGE LSQAGSFEEL EPSAPTYHNE FHGHHAVAMN HSYPAYVAPG PASTPRTSDN SNNPDDHPWN
201: SHSSDHFHQL SVAPHYHHHH HHSTSFSLPG AHVIDGEIDS SAARGISHPH PFLFGYRSNP RTSPAINTQQ GSSSAQMREH LHTQQQHHVY NNQRQHHVNG
301: PNLASPLVSM TRRGLQPLPM PDQNVGFFLY PPPPQPPSTS GGHREPESDQ FHPWERDWFP HFPIPSIHRT ISSFWHRHF

Best Arabidopsis Sequence Match ( AT2G47700.1 )
(BLAST)

001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF

Arabidopsis Description

RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.