Factsheet for AT2G47700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004436.1-P	Field mustard	nucleus	72.07	68.07
CDX80127	Canola	nucleus	72.07	68.07
CDY53013	Canola	nucleus	67.6	65.76
VIT_07s0005g00420.t01	Wine grape	nucleus	34.64	31.23
GSMUA_Achr2P02250_001	Banana	nucleus	25.42	30.64
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	35.2	29.03
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	35.2	29.03
EES19051	Sorghum	nucleus	35.2	28.83
AT3G05545.1	Thale cress	nucleus	34.08	28.71
Os05t0154600-01	Rice	nucleus	34.92	28.67
TraesCS1A01G095100.1	Wheat	cytosol	29.61	27.11
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	35.2	26.09
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	31.84	25.05
GSMUA_Achr5P27050_001	Banana	nucleus	29.05	25.0
HORVU1Hr1G022130.3	Barley	nucleus, plastid	34.64	22.84
KXG32474	Sorghum	nucleus	28.21	22.1
Zm00001d040789_P001	Maize	nucleus	28.49	22.03
Zm00001d037596_P001	Maize	nucleus	34.64	21.91
GSMUA_Achr8P06630_001	Banana	nucleus	30.17	20.26
AT4G13490.1	Thale cress	cytosol, nucleus, plastid	11.45	18.14
AT2G15260.1	Thale cress	mitochondrion, nucleus	13.97	13.81

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	EntrezGene:819383	ProteinID:AAC63626.2	ProteinID:AEC10878.1	ProteinID:ANM62259.1
ArrayExpress:AT2G47700	EnsemblPlantsGene:AT2G47700	RefSeq:AT2G47700	TAIR:AT2G47700	RefSeq:AT2G47700-TAIR-G	EnsemblPlants:AT2G47700.1
TAIR:AT2G47700.1	Unigene:At.21841	EMBL:BT002412	EMBL:BT008845	EMBL:DQ086859	GO:GO:0000003
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010017	GO:GO:0010114
GO:GO:0010218	GO:GO:0010468	GO:GO:0010629	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	GO:GO:0048511	GO:GO:0090227	GO:GO:2000028	InterPro:IPR001841	InterPro:IPR013083
RefSeq:NP_001324431.1	RefSeq:NP_850478.1	UniProt:O82239	PFAM:PF13639	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF69	Symbol:RFI2
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00000AC068	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]

Coordinates

chr2:-:19552314..19554647

Molecular Weight (calculated)

39938.9 Da

IEP (calculated)

6.445

GRAVY (calculated)

-0.777

Length

358 amino acids

Sequence
(BLAST)

001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.