Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G47700.1 | Thale cress | nucleus | 18.14 | 11.45 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 14.6 | 11.11 |
| AT2G15260.1 | Thale cress | mitochondrion, nucleus | 17.7 | 11.05 |
| AT3G05545.1 | Thale cress | nucleus | 20.35 | 10.82 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 19.91 | 10.37 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 19.91 | 10.37 |
| Os05t0154600-01 | Rice | nucleus | 19.47 | 10.09 |
| KXG32474 | Sorghum | nucleus | 19.47 | 9.63 |
| EES19051 | Sorghum | nucleus | 18.58 | 9.61 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 16.81 | 9.13 |
| Zm00001d040789_P001 | Maize | nucleus | 18.14 | 8.86 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 17.7 | 8.79 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 18.58 | 8.7 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 19.91 | 8.44 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 14.16 | 8.18 |
| Zm00001d037596_P001 | Maize | nucleus | 20.35 | 8.13 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 19.03 | 7.92 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:826981 | ProteinID:AEE83285.1 | ArrayExpress:AT4G13490 | EnsemblPlantsGene:AT4G13490 |
| RefSeq:AT4G13490 | TAIR:AT4G13490 | RefSeq:AT4G13490-TAIR-G | EnsemblPlants:AT4G13490.1 | TAIR:AT4G13490.1 | Unigene:At.54307 |
| ProteinID:CAB41107.1 | ProteinID:CAB78391.1 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_193085.1 | PFAM:PF17123 |
| PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | UniProt:Q9T0H0 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI000009F68D | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H0]
Coordinates
chr4:-:7839137..7840284
Molecular Weight (calculated)
24905.0 Da
IEP (calculated)
4.134
GRAVY (calculated)
-0.544
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLESDIKES KRVVEPFDDD DCAVCLEPLA NDADERTVVK LRCSHKFHLD CVGSSFNIKN KMECPCCRQI EKGKWLFAEP VDQLEEDDMS PLDMLTNMVS
101: PSFLHIDDGI FTNIASVLFP NALNQISNNA NVSSNPLGEP RNTLLDTRMQ RQVDEHVAST VDSERRLPDM LFELHDRTGG SGPSGYGRER SGGEGGENSC
201: GGEAVAEEDQ VGEAAEGAEM MDNLNF
101: PSFLHIDDGI FTNIASVLFP NALNQISNNA NVSSNPLGEP RNTLLDTRMQ RQVDEHVAST VDSERRLPDM LFELHDRTGG SGPSGYGRER SGGEGGENSC
201: GGEAVAEEDQ VGEAAEGAEM MDNLNF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.