Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0819400-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47700.1 | Os01t0819400-00 | AT3G08690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G095100.1 | Wheat | cytosol | 75.69 | 84.4 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 83.03 | 83.41 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 82.8 | 83.18 |
| EES19051 | Sorghum | nucleus | 78.67 | 78.49 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 75.92 | 68.53 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 83.03 | 66.67 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 64.91 | 62.2 |
| Zm00001d037596_P001 | Maize | nucleus | 75.46 | 58.13 |
| Bra039430.1-P | Field mustard | cytosol, mitochondrion, nucleus | 16.28 | 49.31 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 26.61 | 39.06 |
| KRH68500 | Soybean | nucleus | 35.55 | 37.17 |
| KRG96789 | Soybean | nucleus | 35.32 | 36.93 |
| Solyc01g099790.2.1 | Tomato | nucleus | 36.01 | 36.85 |
| PGSC0003DMT400063581 | Potato | nucleus | 36.01 | 36.77 |
| KRH33887 | Soybean | nucleus | 36.24 | 36.66 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 35.09 | 36.17 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 34.4 | 36.06 |
| KRG92902 | Soybean | nucleus | 36.01 | 35.76 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 32.11 | 35.26 |
| AT2G47700.1 | Thale cress | nucleus | 28.67 | 34.92 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 41.05 | 33.58 |
| CDY05177 | Canola | nucleus | 30.73 | 32.45 |
| CDY40715 | Canola | nucleus | 30.73 | 32.29 |
| CDX74141 | Canola | nucleus | 30.5 | 32.05 |
| Bra040540.1-P | Field mustard | nucleus | 30.73 | 31.9 |
| Bra001153.1-P | Field mustard | nucleus | 30.28 | 31.81 |
| CDY53013 | Canola | nucleus | 26.83 | 31.79 |
| CDY18820 | Canola | nucleus | 30.5 | 31.67 |
| AT3G05545.1 | Thale cress | nucleus | 30.73 | 31.53 |
| CDX80127 | Canola | nucleus | 27.06 | 31.13 |
| Bra004436.1-P | Field mustard | nucleus | 27.06 | 31.13 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 25.69 | 30.85 |
| CDY64147 | Canola | cytosol | 9.4 | 26.11 |
| CDY27760 | Canola | cytosol | 4.82 | 25.61 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 11.47 | 25.38 |
| Os08t0539300-01 | Rice | nucleus | 22.94 | 23.58 |
| CDX89655 | Canola | nucleus | 14.22 | 21.23 |
| Os09t0511500-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 19.5 | 21.04 |
| CDX93159 | Canola | nucleus | 14.22 | 20.88 |
| Bra013110.1-P | Field mustard | nucleus | 13.76 | 20.27 |
| AT4G13490.1 | Thale cress | cytosol, nucleus, plastid | 10.09 | 19.47 |
| Bra039429.1-P | Field mustard | plastid | 5.96 | 18.7 |
| CDY31489 | Canola | cytosol | 13.53 | 17.1 |
| AT2G15260.1 | Thale cress | mitochondrion, nucleus | 13.07 | 15.75 |
Protein Annotations
| EnsemblPlants:Os05t0154600-01 | EnsemblPlantsGene:Os05g0154600 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 | ProteinID:BAF16597.1 |
| ProteinID:BAS92343.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0000E12358 | UniProt:Q0DKM6 |
| MapMan:19.2.2.1.5.3.3 | : | : | : | : | : |
Description
AvrPiz-t Interacting Protein 6Similar to VIP2 protein. (Os05t0154600-01);Similar to VIP2 protein. (Os05t0154600-02)
Coordinates
chr5:-:3189852..3195554
Molecular Weight (calculated)
47665.8 Da
IEP (calculated)
6.044
GRAVY (calculated)
-0.711
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: REEVREEEGE EGEGVGGKEE EKAAAAAAAV SCSICLDAVV AAGGERSTAR LQCGHEFHLD CIGSAFNAKG VMQCPNCRKI EKGNWLYANG SRPTQDVNMD
101: EWAHDEDLYD VSYSEMPFRF HWCPFGRLAQ LPSFFEEGES SPPVTFHDFM GQHMFTEHVA AVSSAPGAAH PCPYVAYLHP LPSLASSSSS HVPERTMDGP
201: AYHDPWHPLA GPSDGRPLQS VQPADFHHNH WAHVPNSYPQ PNNNNGVAEQ QGVPFGTTRA ARVDGDTQRR GSSISPSYFS NGSGSRSRAP NVPPMVPQFM
301: RAHGSISEQY QQSSSSSLFA GAHRSGGMRT APPPPLPENP AFCLFPPGSS GHNSMETDDA GGNRFYAWER DRFAPYPLMP VDCETNWWSS QQSHGTSEPA
401: PAPRRLFGQW IGVGRSSPEN RSPEGSSYRQ MHTPRM
101: EWAHDEDLYD VSYSEMPFRF HWCPFGRLAQ LPSFFEEGES SPPVTFHDFM GQHMFTEHVA AVSSAPGAAH PCPYVAYLHP LPSLASSSSS HVPERTMDGP
201: AYHDPWHPLA GPSDGRPLQS VQPADFHHNH WAHVPNSYPQ PNNNNGVAEQ QGVPFGTTRA ARVDGDTQRR GSSISPSYFS NGSGSRSRAP NVPPMVPQFM
301: RAHGSISEQY QQSSSSSLFA GAHRSGGMRT APPPPLPENP AFCLFPPGSS GHNSMETDDA GGNRFYAWER DRFAPYPLMP VDCETNWWSS QQSHGTSEPA
401: PAPRRLFGQW IGVGRSSPEN RSPEGSSYRQ MHTPRM
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.