CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74141	Canola	nucleus	91.81	91.81
AT3G05545.1	Thale cress	nucleus	83.13	81.18
CDY05177	Canola	nucleus	78.07	78.45
CDY27759	Canola	endoplasmic reticulum, vacuole	68.43	78.24
CDY18820	Canola	nucleus	74.22	73.33
CDY27760	Canola	cytosol	10.12	51.22
VIT_14s0060g02280.t01	Wine grape	nucleus	49.64	48.7
KRH68500	Soybean	nucleus	47.71	47.48
KRH33887	Soybean	nucleus	49.16	47.33
KRG96789	Soybean	nucleus	47.47	47.24
KRG92902	Soybean	nucleus	49.16	46.47
Solyc01g099790.2.1	Tomato	nucleus	46.02	44.84
PGSC0003DMT400063581	Potato	nucleus	46.02	44.73
GSMUA_Achr2P02250_001	Banana	nucleus	24.58	34.34
GSMUA_Achr5P27050_001	Banana	nucleus	32.53	32.45
CDY64147	Canola	cytosol	12.05	31.85
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	33.01	31.57
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	33.01	31.57
Os05t0154600-01	Rice	nucleus	32.29	30.73
EES19051	Sorghum	nucleus	31.81	30.21
CDY53013	Canola	nucleus	26.51	29.89
CDX80127	Canola	nucleus	26.99	29.55
TraesCS1A01G095100.1	Wheat	cytosol	27.71	29.41
CDX89655	Canola	nucleus	19.52	27.74
CDX85292	Canola	cytosol, golgi, peroxisome	13.01	27.41
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	29.64	27.03
KXG32474	Sorghum	nucleus	29.16	26.48
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	30.36	26.09
CDX93159	Canola	nucleus	18.31	25.59
Zm00001d040789_P001	Maize	nucleus	28.19	25.27
GSMUA_Achr8P06630_001	Banana	nucleus	32.29	25.14
HORVU1Hr1G022130.3	Barley	nucleus, plastid	32.05	24.49
Zm00001d037596_P001	Maize	nucleus	30.84	22.61
CDY31489	Canola	cytosol	16.87	20.29

Protein Annotations

EnsemblPlants:CDY40715	EnsemblPlantsGene:GSBRNA2T00071606001	Gene3D:3.30.40.10	GO:A0A078HQ54	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
ProteinID:CDY40715	ProteinID:CDY40715.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EBF157
UniProt:A0A078HQ54	MapMan:19.2.2.1.5.3.3	:	:	:	:

Description

BnaC03g34310DBnaC03g34310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ54]

Coordinates

chrLK032477:+:283457..287702

Molecular Weight (calculated)

44865.1 Da

IEP (calculated)

6.541

GRAVY (calculated)

-0.735

Length

415 amino acids

Sequence
(BLAST)

001: MGLGNKVNKF NFGDNDHLPD EGGGGEEGDG FGSVACSICL DTVAKDGDRA WANLQCGHQF HLDCIGSAFN AKGVMQCPNC RKVEKGQWLY ANGCRSHPEF
101: NVDDWVHEEE IYDIGSYPEM AFGVHWCPFG SSARLPSFED GDFSPSSFHD LLNQQAYFTE PPAAPTAGHP CPYVTYIGPV HSSSSSSAGV TGVSDSPSFT
201: SHWNTGSSGE VPTPYGFPHY HGWEYHSPPP TPPQHFSPSV PHVGSPTHPT PPPASARTSR ANGSDVIRPR PPQFMRPSYH GHSSSGRAGS SVASVPRTPP
301: FPGSNVRTRD RTQALQAYYQ QSTAQSHQPD SPIVSRGPVF PSGPRPSRGS ASSSSDQSGG GSRFLWFNIW EREPYMQPQQ AYQVNQMERE PSIWASTFNE
401: GGGSFHQRHG GGGPS

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.