CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68500	Soybean	nucleus	93.29	93.29
KRH33887	Soybean	nucleus	85.13	82.37
KRG92902	Soybean	nucleus	81.3	77.22
VIT_14s0060g02280.t01	Wine grape	nucleus	71.22	70.21
Solyc01g099790.2.1	Tomato	nucleus	63.79	62.44
PGSC0003DMT400063581	Potato	nucleus	63.55	62.06
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	19.66	56.94
CDY40715	Canola	nucleus	47.24	47.47
AT3G05545.1	Thale cress	nucleus	48.2	47.29
Bra001153.1-P	Field mustard	nucleus	46.04	46.27
CDX74141	Canola	nucleus	46.04	46.27
CDY05177	Canola	nucleus	45.8	46.25
CDY18820	Canola	nucleus	46.04	45.71
Bra040540.1-P	Field mustard	nucleus	45.56	45.24
CDY27759	Canola	endoplasmic reticulum, vacuole	39.09	44.9
Bra039429.1-P	Field mustard	plastid	13.91	41.73
GSMUA_Achr2P02250_001	Banana	nucleus	26.14	36.7
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	37.17	35.71
GSMUA_Achr5P27050_001	Banana	nucleus	35.49	35.58
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	36.93	35.48
CDY27760	Canola	cytosol	6.95	35.37
Os05t0154600-01	Rice	nucleus	36.93	35.32
EES19051	Sorghum	nucleus	36.21	34.55
TraesCS1A01G095100.1	Wheat	cytosol	31.89	34.02
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	35.97	31.06
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	33.09	30.33
KXG32474	Sorghum	nucleus	31.18	28.45
GSMUA_Achr8P06630_001	Banana	nucleus	35.73	27.95
HORVU1Hr1G022130.3	Barley	nucleus, plastid	36.21	27.81
Zm00001d040789_P001	Maize	nucleus	30.22	27.21
Zm00001d037596_P001	Maize	nucleus	35.97	26.5

Protein Annotations

EMBL:ACUP02012163	EnsemblPlants:KRG96789	EnsemblPlantsGene:GLYMA_19G232800	EntrezGene:100815923	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF17123
PFscan:PS50089	ProteinID:KRG96789	ProteinID:KRG96789.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000233E782	UniProt:I1NBW9	MapMan:19.2.2.1.5.3.3	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:48288132..48294489

Molecular Weight (calculated)

45663.2 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.612

Length

417 amino acids

Sequence
(BLAST)

001: MGLGNDDDDG DTLKSFGSVC CSICLEAVTD NGDRSWAKLQ CGHQFHLDCI GSAFNIKGAM QCPNCRKVEK GQWLYANGCR SYPEFSMDEW THDEDLYDLS
101: YSEMSFGVHW CPFGNLTRLP SSFEEGDFSS TAYHDVLGQH AIFAEHTAVS SASHPCPYIA YFGPIHPSTS NSGGTVSEAS NFNHWNGPPV PGDMPTSYTF
201: PAVDLHYHSW EHNSSHFSSA NSRLGTAEQA SVSPGSQRPA RVGSEVPRSG SFMHPFLVGH SSAARAGNSV ASSMIPPYPG SNARARDRVQ ALQAYYQPQQ
301: PHNSTTIRTP VASSTRRSSS HSGPVQLAPV ASPPDQSAGF VYIPSGSSGR NFQEETHLPS RFHAWEREHL PSLALNNVGR ESSWRAYHQT ASVSDPSIRS
401: SSFRLRHESD RMPSQNR

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.