Factsheet for Bra001153.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74141	Canola	nucleus	99.52	99.52
Bra039429.1-P	Field mustard	plastid	27.23	81.3
AT3G05545.1	Thale cress	nucleus	82.89	80.94
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	26.99	77.78
Bra040540.1-P	Field mustard	nucleus	76.63	75.71
VIT_14s0060g02280.t01	Wine grape	nucleus	49.64	48.7
KRG92902	Soybean	nucleus	49.64	46.92
KRH33887	Soybean	nucleus	48.67	46.87
KRH68500	Soybean	nucleus	46.99	46.76
KRG96789	Soybean	nucleus	46.27	46.04
Solyc01g099790.2.1	Tomato	nucleus	46.51	45.31
PGSC0003DMT400063581	Potato	nucleus	46.51	45.2
GSMUA_Achr2P02250_001	Banana	nucleus	24.58	34.34
GSMUA_Achr5P27050_001	Banana	nucleus	31.81	31.73
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	33.01	31.57
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	33.01	31.57
Os05t0154600-01	Rice	nucleus	31.81	30.28
Bra004436.1-P	Field mustard	nucleus	27.23	29.82
EES19051	Sorghum	nucleus	31.08	29.52
TraesCS1A01G095100.1	Wheat	cytosol	27.71	29.41
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	29.16	26.59
KXG32474	Sorghum	nucleus	28.92	26.26
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	29.4	25.26
Zm00001d040789_P001	Maize	nucleus	27.71	24.84
GSMUA_Achr8P06630_001	Banana	nucleus	31.57	24.58
HORVU1Hr1G022130.3	Barley	nucleus, plastid	32.05	24.49
Bra013110.1-P	Field mustard	nucleus	16.87	23.65
Zm00001d037596_P001	Maize	nucleus	30.6	22.44

Protein Annotations

EnsemblPlants:Bra001153.1	EnsemblPlants:Bra001153.1-P	EnsemblPlantsGene:Bra001153	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002540A27	UniProt:M4CAC4	MapMan:19.2.2.1.5.3.3

Description

AT3G05545 (E=2e-143) | transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein

Coordinates

chrA03:+:15000728..15002990

Molecular Weight (calculated)

44756.0 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.754

Length

415 amino acids

Sequence
(BLAST)

001: MGLGNKVNKF NFGDNDHLPD EGGGGEEGDG FGSVACSICL DTVAKDGDRA WANLQCGHQF HLDCIGSAFN AKGVMQCPNC RKVEKGQWLY ANGCRSHPEF
101: NVEDWVHEEE IYDIGSYPEM AFGVHWCPFG SSARLPSFED GDFSPSSYHD LLNQQGYFTE PPAPTAAGHP CPYVTYIGPV HSSSSSSAGA AGVSDSPSFT
201: SHWNTGSSAE VPTPYGFPHY HGWEYHSPPP TPPQHFSPSG PHVGSPTHPT PPPASARTSR ANGSDVIRPR MPQFMRPSYH GHSSSGRAGS SVASVPRTPP
301: FPGSNVRTRD RTQALQAYYQ QSTAQQHQPD SPIVSRGPVF PSGRRPSRGS ASSSSDQAGG GSGFLRFNIW EREPYMQPQQ AYQVNQMDRE PSIWASSFNE
401: GGGSFHQRHG GGGPS

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.